| UniProt: | P42914 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12774 | ||
| Length: | 231 (210) | ||
| Sequences: | 1350 | ||
| Seq/Len: | 6.43 |
| YRAI
Paralog alert: 0.90 [within 20: 0.52] - ratio of genomes with paralogs Cluster includes: ECPD ELFD FIMC SFMC YBGP YCBF YEHC YFCS YHCA YQIH YRAI |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 98_L | 106_F | 2.875 | 1.00 | |
| 28_L | 135_I | 2.871 | 1.00 | |
| 175_V | 192_Y | 2.861 | 1.00 | |
| 173_Y | 194_A | 2.783 | 1.00 | |
| 194_A | 197_E | 2.733 | 1.00 | |
| 105_L | 192_Y | 2.723 | 1.00 | |
| 138_F | 192_Y | 2.564 | 1.00 | |
| 102_K | 196_G | 2.457 | 1.00 | |
| 36_D | 39_R | 2.445 | 1.00 | |
| 167_Y | 198_H | 2.366 | 1.00 | |
| 156_E | 167_Y | 2.263 | 1.00 | |
| 61_V | 137_M | 2.208 | 1.00 | |
| 33_V | 108_I | 2.167 | 1.00 | |
| 60_W | 109_N | 2.15 | 1.00 | |
| 55_Y | 112_A | 2.132 | 1.00 | |
| 166_I | 201_L | 2.121 | 1.00 | |
| 33_V | 42_A | 2.118 | 1.00 | |
| 62_D | 134_R | 2.097 | 1.00 | |
| 33_V | 91_I | 2.048 | 1.00 | |
| 99_P | 104_S | 2.016 | 1.00 | |
| 54_P | 82_E | 1.996 | 1.00 | |
| 54_P | 80_R | 1.983 | 1.00 | |
| 37_A | 100_E | 1.918 | 1.00 | |
| 109_N | 134_R | 1.887 | 1.00 | |
| 111_R | 132_K | 1.706 | 1.00 | |
| 105_L | 175_V | 1.701 | 1.00 | |
| 144_L | 172_Y | 1.678 | 1.00 | |
| 38_S | 142_A | 1.676 | 1.00 | |
| 99_P | 102_K | 1.666 | 1.00 | |
| 62_D | 109_N | 1.666 | 1.00 | |
| 157_F | 166_I | 1.654 | 1.00 | |
| 150_D | 153_K | 1.647 | 1.00 | |
| 72_F | 91_I | 1.639 | 1.00 | |
| 148_V | 151_A | 1.598 | 1.00 | |
| 154_S | 170_T | 1.583 | 0.99 | |
| 165_N | 200_Q | 1.545 | 0.99 | |
| 91_I | 137_M | 1.506 | 0.99 | |
| 82_E | 85_D | 1.501 | 0.99 | |
| 217_N | 223_S | 1.494 | 0.99 | |
| 36_D | 42_A | 1.494 | 0.99 | |
| 217_N | 221_G | 1.485 | 0.99 | |
| 155_L | 166_I | 1.483 | 0.99 | |
| 151_A | 174_V | 1.464 | 0.99 | |
| 193_I | 199_K | 1.451 | 0.99 | |
| 93_K | 96_D | 1.451 | 0.99 | |
| 74_I | 89_L | 1.436 | 0.99 | |
| 174_V | 215_A | 1.432 | 0.99 | |
| 158_K | 165_N | 1.402 | 0.98 | |
| 26_I | 81_L | 1.393 | 0.98 | |
| 165_N | 198_H | 1.378 | 0.98 | |
| 28_L | 110_V | 1.374 | 0.98 | |
| 46_V | 57_L | 1.355 | 0.98 | |
| 45_P | 86_D | 1.344 | 0.98 | |
| 74_I | 91_I | 1.336 | 0.98 | |
| 28_L | 44_L | 1.317 | 0.97 | |
| 51_A | 84_G | 1.313 | 0.97 | |
| 62_D | 107_Y | 1.3 | 0.97 | |
| 138_F | 173_Y | 1.296 | 0.97 | |
| 27_V | 30_R | 1.287 | 0.97 | |
| 175_V | 215_A | 1.282 | 0.97 | |
| 33_V | 135_I | 1.274 | 0.97 | |
| 54_P | 115_A | 1.247 | 0.96 | |
| 89_L | 108_I | 1.246 | 0.96 | |
| 105_L | 138_F | 1.235 | 0.96 | |
| 157_F | 179_L | 1.231 | 0.96 | |
| 211_V | 215_A | 1.226 | 0.96 | |
| 35_Y | 42_A | 1.223 | 0.96 | |
| 163_S | 200_Q | 1.209 | 0.95 | |
| 158_K | 167_Y | 1.205 | 0.95 | |
| 160_S | 165_N | 1.203 | 0.95 | |
| 57_L | 79_F | 1.2 | 0.95 | |
| 160_S | 163_S | 1.197 | 0.95 | |
| 87_S | 111_R | 1.187 | 0.95 | |
| 25_G | 112_A | 1.174 | 0.94 | |
| 74_I | 108_I | 1.164 | 0.94 | |
| 113_I | 131_F | 1.16 | 0.94 | |
| 89_L | 110_V | 1.158 | 0.94 | |
| 107_Y | 111_R | 1.145 | 0.93 | |
| 193_I | 197_E | 1.138 | 0.93 | |
| 176_F | 193_I | 1.122 | 0.92 | |
| 59_S | 89_L | 1.114 | 0.92 | |
| 93_K | 97_N | 1.096 | 0.91 | |
| 59_S | 110_V | 1.093 | 0.91 | |
| 93_K | 139_Y | 1.082 | 0.90 | |
| 146_G | 150_D | 1.076 | 0.90 | |
| 81_L | 86_D | 1.058 | 0.89 | |
| 215_A | 223_S | 1.053 | 0.89 | |
| 103_E | 140_R | 1.034 | 0.87 | |
| 110_V | 135_I | 1.033 | 0.87 | |
| 60_W | 134_R | 1.031 | 0.87 | |
| 50_G | 112_A | 1.027 | 0.87 | |
| 88_S | 132_K | 1.027 | 0.87 | |
| 87_S | 112_A | 1.025 | 0.87 | |
| 56_L | 172_Y | 1.024 | 0.87 | |
| 166_I | 176_F | 1.024 | 0.87 | |
| 155_L | 176_F | 1.014 | 0.86 | |
| 178_G | 214_A | 1.013 | 0.86 | |
| 152_W | 174_V | 1.013 | 0.86 | |
| 56_L | 111_R | 1.011 | 0.86 | |
| 125_N | 134_R | 1.007 | 0.85 | |
| 152_W | 213_W | 1.003 | 0.85 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4djmA | 8 | 0.974 | 100 | 0.153 | Contact Map | 0.804 |
| 1klfA | 8 | 0.8831 | 100 | 0.161 | Contact Map | 0.794 |
| 1l4iA | 2 | 0.8788 | 100 | 0.169 | Contact Map | 0.776 |
| 2co7B | 1 | 0.9351 | 100 | 0.169 | Contact Map | 0.733 |
| 4ay0A | 2 | 0.9221 | 100 | 0.185 | Contact Map | 0.762 |
| 2xg5A | 1 | 0.8658 | 100 | 0.198 | Contact Map | 0.783 |
| 3gfuC | 2 | 0.8485 | 100 | 0.204 | Contact Map | 0.695 |
| 3q48A | 2 | 0.974 | 100 | 0.213 | Contact Map | 0.806 |
| 1mspA | 2 | 0.4935 | 53.9 | 0.945 | Contact Map | 0.565 |
| 1z9lA | 1 | 0.4978 | 25.6 | 0.954 | Contact Map | 0.701 |
Sequence Conservation (Image Generated using WebLogo v3)