| UniProt: | P40876 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12397 | ||
| Length: | 236 (208) | ||
| Sequences: | 1348 | ||
| Seq/Len: | 6.48 |
| YCBF
Paralog alert: 0.90 [within 20: 0.51] - ratio of genomes with paralogs Cluster includes: ECPD ELFD FIMC SFMC YBGP YCBF YEHC YFCS YHCA YQIH YRAI |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 107_L | 115_F | 2.958 | 1.00 | |
| 30_V | 140_F | 2.906 | 1.00 | |
| 180_N | 196_V | 2.898 | 1.00 | |
| 178_Y | 198_P | 2.71 | 1.00 | |
| 198_P | 201_S | 2.684 | 1.00 | |
| 114_L | 196_V | 2.683 | 1.00 | |
| 143_F | 196_V | 2.511 | 1.00 | |
| 38_P | 41_R | 2.483 | 1.00 | |
| 111_R | 200_K | 2.448 | 1.00 | |
| 172_T | 202_Q | 2.397 | 1.00 | |
| 35_F | 117_L | 2.279 | 1.00 | |
| 161_R | 172_T | 2.183 | 1.00 | |
| 56_W | 121_S | 2.18 | 1.00 | |
| 62_I | 142_L | 2.164 | 1.00 | |
| 35_F | 44_I | 2.135 | 1.00 | |
| 61_K | 118_S | 2.129 | 1.00 | |
| 171_L | 205_T | 2.103 | 1.00 | |
| 63_N | 139_V | 2.076 | 1.00 | |
| 108_P | 113_T | 2.07 | 1.00 | |
| 55_S | 88_L | 1.972 | 1.00 | |
| 35_F | 99_L | 1.968 | 1.00 | |
| 55_S | 90_K | 1.951 | 1.00 | |
| 39_A | 109_V | 1.951 | 1.00 | |
| 118_S | 139_V | 1.871 | 1.00 | |
| 120_A | 137_R | 1.761 | 1.00 | |
| 80_L | 99_L | 1.666 | 1.00 | |
| 63_N | 118_S | 1.665 | 1.00 | |
| 114_L | 180_N | 1.631 | 1.00 | |
| 40_D | 147_E | 1.627 | 1.00 | |
| 149_L | 177_Y | 1.607 | 1.00 | |
| 162_W | 171_L | 1.582 | 1.00 | |
| 108_P | 111_R | 1.577 | 0.99 | |
| 159_Q | 175_T | 1.556 | 0.99 | |
| 153_P | 156_A | 1.548 | 0.99 | |
| 90_K | 93_T | 1.545 | 0.99 | |
| 101_R | 104_S | 1.54 | 0.99 | |
| 28_V | 89_L | 1.537 | 0.99 | |
| 170_Q | 204_Q | 1.533 | 0.99 | |
| 222_N | 228_S | 1.503 | 0.99 | |
| 99_L | 142_L | 1.487 | 0.99 | |
| 82_A | 97_L | 1.473 | 0.99 | |
| 165_N | 170_Q | 1.442 | 0.99 | |
| 157_Y | 218_W | 1.438 | 0.99 | |
| 30_V | 119_I | 1.431 | 0.99 | |
| 170_Q | 202_Q | 1.4 | 0.99 | |
| 155_E | 158_Q | 1.38 | 0.98 | |
| 222_N | 226_G | 1.374 | 0.98 | |
| 47_L | 94_T | 1.37 | 0.98 | |
| 156_A | 179_I | 1.364 | 0.98 | |
| 163_T | 170_Q | 1.352 | 0.98 | |
| 35_F | 140_F | 1.344 | 0.98 | |
| 180_N | 220_A | 1.339 | 0.98 | |
| 160_L | 171_L | 1.336 | 0.98 | |
| 38_P | 44_I | 1.328 | 0.98 | |
| 197_V | 203_R | 1.319 | 0.98 | |
| 63_N | 116_E | 1.317 | 0.98 | |
| 179_I | 220_A | 1.307 | 0.97 | |
| 48_L | 58_I | 1.303 | 0.97 | |
| 29_V | 32_G | 1.29 | 0.97 | |
| 143_F | 178_Y | 1.288 | 0.97 | |
| 58_I | 87_I | 1.257 | 0.96 | |
| 53_Q | 92_G | 1.234 | 0.96 | |
| 156_A | 220_A | 1.234 | 0.96 | |
| 97_L | 117_L | 1.225 | 0.96 | |
| 60_S | 119_I | 1.223 | 0.96 | |
| 197_V | 201_S | 1.218 | 0.96 | |
| 114_L | 143_F | 1.218 | 0.96 | |
| 30_V | 46_I | 1.216 | 0.96 | |
| 37_F | 44_I | 1.202 | 0.95 | |
| 165_N | 168_G | 1.202 | 0.95 | |
| 95_G | 120_A | 1.187 | 0.95 | |
| 27_G | 121_S | 1.185 | 0.95 | |
| 162_W | 184_V | 1.178 | 0.94 | |
| 101_R | 144_W | 1.175 | 0.94 | |
| 122_V | 136_M | 1.175 | 0.94 | |
| 163_T | 172_T | 1.171 | 0.94 | |
| 55_S | 124_S | 1.159 | 0.94 | |
| 116_E | 120_A | 1.137 | 0.93 | |
| 82_A | 99_L | 1.136 | 0.93 | |
| 82_A | 117_L | 1.134 | 0.93 | |
| 168_G | 204_Q | 1.118 | 0.92 | |
| 181_L | 197_V | 1.115 | 0.92 | |
| 97_L | 119_I | 1.111 | 0.92 | |
| 151_G | 155_E | 1.096 | 0.91 | |
| 220_A | 228_S | 1.085 | 0.91 | |
| 96_T | 137_R | 1.082 | 0.90 | |
| 153_P | 157_Y | 1.074 | 0.90 | |
| 95_G | 121_S | 1.046 | 0.88 | |
| 60_S | 97_L | 1.044 | 0.88 | |
| 56_W | 120_A | 1.035 | 0.88 | |
| 171_L | 181_L | 1.034 | 0.88 | |
| 76_V | 79_P | 1.03 | 0.87 | |
| 112_E | 145_R | 1.027 | 0.87 | |
| 57_L | 177_Y | 1.026 | 0.87 | |
| 52_S | 56_W | 1.026 | 0.87 | |
| 89_L | 94_T | 1.026 | 0.87 | |
| 183_Q | 219_R | 1.024 | 0.87 | |
| 48_L | 89_L | 1.017 | 0.86 | |
| 52_S | 121_S | 1.007 | 0.86 | |
| 61_K | 139_V | 1.005 | 0.85 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4djmA | 8 | 0.9449 | 100 | 0.203 | Contact Map | 0.815 |
| 1klfA | 8 | 0.8517 | 100 | 0.216 | Contact Map | 0.792 |
| 2co7B | 1 | 0.9025 | 100 | 0.218 | Contact Map | 0.738 |
| 4ay0A | 2 | 0.911 | 100 | 0.221 | Contact Map | 0.759 |
| 1l4iA | 2 | 0.8559 | 100 | 0.222 | Contact Map | 0.775 |
| 2xg5A | 1 | 0.8517 | 100 | 0.244 | Contact Map | 0.801 |
| 3gfuC | 2 | 0.8263 | 100 | 0.249 | Contact Map | 0.713 |
| 3q48A | 2 | 0.9619 | 100 | 0.269 | Contact Map | 0.808 |
| 1mspA | 2 | 0.4746 | 59.3 | 0.947 | Contact Map | 0.54 |
| 1z9lA | 1 | 0.4831 | 31.8 | 0.955 | Contact Map | 0.685 |
Sequence Conservation (Image Generated using WebLogo v3)