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YGIL - Uncharacterized fimbrial-like protein YgiL
UniProt: P39834 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12363
Length: 183 (179)
Sequences: 1483
Seq/Len: 8.28
YGIL
Paralog alert: 0.95 [within 20: 0.79] - ratio of genomes with paralogs
Cluster includes: ELFA FIMA1 FIMF FIMG FIMI SFMA SFMF YADN YBGD YCBU YCBV YDER YDES YFCP YFCV YGIL YRAH
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
125_V 158_A 3.269 1.00
92_A 180_I 2.89 1.00
126_R 159_R 2.765 1.00
121_T 168_T 2.718 1.00
126_R 161_E 2.665 1.00
108_L 124_G 2.615 1.00
128_L 159_R 2.338 1.00
160_M 172_V 2.325 1.00
74_T 153_E 2.313 1.00
111_N 172_V 2.248 1.00
44_K 78_Q 2.247 1.00
122_G 167_A 2.167 1.00
42_S 79_D 2.125 1.00
44_K 47_D 2.102 1.00
109_L 137_L 2.063 1.00
44_K 76_H 2.003 1.00
109_L 176_A 1.976 1.00
125_V 174_A 1.905 1.00
129_D 133_G 1.845 1.00
126_R 134_E 1.725 1.00
63_K 66_Q 1.696 1.00
67_K 159_R 1.611 1.00
54_L 172_V 1.557 1.00
47_D 76_H 1.525 1.00
123_V 160_M 1.504 1.00
62_L 162_S 1.495 1.00
74_T 155_N 1.441 0.99
38_S 59_D 1.434 0.99
55_G 172_V 1.409 0.99
94_V 154_L 1.4 0.99
98_T 109_L 1.386 0.99
57_V 68_S 1.376 0.99
6_K 9_L 1.341 0.99
62_L 167_A 1.331 0.99
67_K 126_R 1.33 0.99
76_H 153_E 1.313 0.99
11_A 15_M 1.309 0.98
108_L 161_E 1.302 0.98
72_P 157_K 1.3 0.98
109_L 174_A 1.293 0.98
147_N 152_Q 1.286 0.98
10_V 13_V 1.285 0.98
120_A 123_V 1.285 0.98
62_L 163_P 1.269 0.98
47_D 50_L 1.268 0.98
8_L 11_A 1.255 0.98
36_V 57_V 1.254 0.98
5_K 11_A 1.251 0.98
55_G 69_L 1.25 0.98
42_S 78_Q 1.246 0.98
122_G 165_K 1.234 0.98
54_L 160_M 1.201 0.97
132_S 157_K 1.173 0.96
50_L 178_Y 1.172 0.96
50_L 75_I 1.137 0.95
7_S 11_A 1.128 0.95
35_E 56_E 1.127 0.95
57_V 160_M 1.118 0.95
6_K 10_V 1.106 0.95
40_P 152_Q 1.098 0.94
109_L 125_V 1.093 0.94
9_L 12_G 1.079 0.94
8_L 15_M 1.079 0.94
54_L 125_V 1.079 0.94
10_V 17_L 1.074 0.93
5_K 8_L 1.072 0.93
70_A 159_R 1.072 0.93
36_V 158_A 1.059 0.93
31_K 175_Q 1.054 0.92
24_D 27_H 1.047 0.92
170_G 182_Y 1.045 0.92
62_L 123_V 1.037 0.92
162_S 167_A 1.035 0.92
14_A 17_L 1.028 0.91
7_S 17_L 1.024 0.91
67_K 161_E 1.024 0.91
156_F 178_Y 1.021 0.91
5_K 12_G 1.02 0.91
8_L 12_G 1.012 0.90
15_M 18_S 1.011 0.90
113_K 118_G 1.01 0.90
127_I 137_L 1.006 0.90
157_K 174_A 1.006 0.90
106_S 136_T 1.006 0.90
108_L 126_R 1.005 0.90
7_S 16_I 1.005 0.90
95_T 181_A 1.002 0.90
136_T 139_T 1.002 0.90
55_G 71_E 1.001 0.90
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
2jmrA10.81971000.268Contact Map0.622
2xg5B10.9291000.276Contact Map0.696
2jtyA10.85251000.284Contact Map0.695
2uy6B20.8471000.295Contact Map0.827
1pdkB10.80331000.308Contact Map0.662
3bwuF10.748699.90.365Contact Map0.775
4dwhB20.76599.90.373Contact Map0.76
2w07B10.76599.90.38Contact Map0.669
3bfqG10.704999.90.4Contact Map0.684
3jwnH20.868999.90.441Contact Map0.686
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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