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OPENSEQ.org
RUTF - RUTR
UniProt: P75893 - P0ACU2
Length: 376
Sequences: 412
Seq/Len: 1.15
I_Prob: 0.00
RUTF - FMN reductase (NADH) RutF
Paralog alert: 0.51 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: RUTF YDDH 		RUTR - HTH-type transcriptional regulator RutR
Paralog alert: 0.77 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ACRR BDCR BETI COMR ENVR NEMR RUTR SLMA UIDR YBIH YBJK YJDC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
86_G 144_L 1.18 0.00
65_E 139_D 1.14 0.00
140_I 44_I 1.09 0.00
47_P 29_D 1.00 0.00
93_H 36_F 0.92 0.00
57_A 55_L 0.92 0.00
64_N 54_N 0.91 0.00
71_V 36_F 0.90 0.00
137_I 167_W 0.86 0.00
75_S 68_A 0.83 0.00
119_C 23_I 0.82 0.00
156_Y 54_N 0.81 0.00
53_L 44_I 0.81 0.00
110_L 180_V 0.79 0.00
71_V 202_Q 0.79 0.00
110_L 140_E 0.79 0.00
106_G 196_Q 0.78 0.00
23_I 160_Q 0.78 0.00
82_S 166_I 0.78 0.00
97_A 203_R 0.78 0.00
126_S 150_K 0.77 0.00
24_T 48_A 0.76 0.00
150_V 44_I 0.75 0.00
99_R 61_S 0.75 0.00
156_Y 33_Q 0.74 0.00
94_R 52_K 0.74 0.00
79_E 41_L 0.74 0.00
111_E 39_T 0.74 0.00
132_I 67_I 0.74 0.00
8_T 55_L 0.73 0.00
45_T 71_R 0.73 0.00
121_I 195_N 0.73 0.00
110_L 93_A 0.72 0.00
64_N 166_I 0.72 0.00
57_A 102_L 0.72 0.00
112_E 206_I 0.71 0.00
107_C 23_I 0.71 0.00
80_P 146_A 0.71 0.00
110_L 148_W 0.70 0.00
47_P 47_L 0.70 0.00
56_G 71_R 0.70 0.00
113_A 44_I 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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