May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PTKA - YEGW
UniProt: P69828 - P0ACM5
Length: 398
Sequences: 358
Seq/Len: 0.97
I_Prob: 0.00

PTKA - Galactitol-specific phosphotransferase enzyme IIA component
Paralog alert: 0.73 [within 20: 0.19] - ratio of genomes with paralogs
Cluster includes: PTFA PTKA PTMA PTSN SGCA ULAC
YEGW - Uncharacterized HTH-type transcriptional regulator YegW
Paralog alert: 0.83 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: FRLR MNGR PHNF YEGW YIDP YIHL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
139_E 64_V 0.95 0.00
14_D 77_V 0.89 0.00
33_H 32_V 0.87 0.00
99_I 185_I 0.84 0.00
126_V 186_Y 0.84 0.00
141_F 134_V 0.81 0.00
99_I 87_I 0.81 0.00
33_H 81_R 0.78 0.00
134_E 232_Y 0.78 0.00
120_L 124_C 0.76 0.00
84_F 79_R 0.76 0.00
97_L 140_V 0.76 0.00
51_I 132_L 0.75 0.00
38_Q 195_S 0.75 0.00
69_K 115_L 0.75 0.00
137_L 226_Q 0.74 0.00
111_K 235_S 0.74 0.00
111_K 58_G 0.73 0.00
66_I 176_L 0.72 0.00
93_V 77_V 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.2221 seconds.