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OPENSEQ.org

YHDW - YHDZ
UniProt: P45766 - P45769
Length: 593
Sequences: 378
Seq/Len: 0.67
I_Prob: 0.00

YHDW - Putative amino-acid ABC transporter-binding protein YhdW
Paralog alert: 0.20 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: ARGT ARTI ARTJ FLIY GLNH GLTI HISJ YHDW
YHDZ - Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ
Paralog alert: 0.94 [within 20: 0.87] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
255_M 31_I 1.06 0.00
73_F 105_V 0.93 0.00
73_F 126_D 0.92 0.00
275_A 201_L 0.91 0.00
176_T 31_I 0.91 0.00
336_Y 27_V 0.89 0.00
100_L 218_I 0.85 0.00
52_D 123_E 0.83 0.00
100_L 52_S 0.82 0.00
262_V 71_V 0.82 0.00
317_S 183_V 0.81 0.00
230_V 31_I 0.81 0.00
31_V 104_T 0.79 0.00
88_E 136_R 0.78 0.00
317_S 138_A 0.77 0.00
327_N 35_V 0.76 0.00
310_E 217_V 0.76 0.00
299_I 189_T 0.75 0.00
132_T 27_V 0.74 0.00
42_S 31_I 0.74 0.00
271_T 218_I 0.74 0.00
173_T 89_E 0.74 0.00
262_V 69_I 0.74 0.00
81_Y 243_T 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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