May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

GSA - MAP1
UniProt: P23893 - P0AE18
Length: 690
Sequences: 489
Seq/Len: 0.72
I_Prob: 0.00

GSA - Glutamate-1-semialdehyde 2,1-aminomutase
Paralog alert: 0.89 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: ARGD ASTC BIOA GABT GSA PAT PUUE
MAP1 - Methionine aminopeptidase
Paralog alert: 0.96 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: AMPP MAP1 PEPQ YPDF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
389_E 11_I 0.91 0.00
326_E 203_I 0.84 0.00
380_K 197_P 0.83 0.00
423_F 94_V 0.79 0.00
312_L 94_V 0.77 0.00
227_C 95_N 0.73 0.00
233_L 114_I 0.73 0.00
50_K 243_N 0.73 0.00
410_E 69_V 0.73 0.00
405_V 115_V 0.71 0.00
279_R 238_I 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.2406 seconds.