May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
CSPA - YIAC
UniProt: P0A9X9 - P37664
Length: 216
Sequences: 355
Seq/Len: 1.68
I_Prob: 0.00
CSPA - Cold shock protein CspA
Paralog alert: 0.78 [within 20: 0.16] - ratio of genomes with paralogs
Cluster includes: CSPA CSPB CSPC CSPD CSPE CSPF CSPG CSPH CSPI 		YIAC - Uncharacterized N-acetyltransferase YiaC
Paralog alert: 0.85 [within 20: 0.17] - ratio of genomes with paralogs
Cluster includes: ATDA PHNO RIMI RIMJ RIML YAFP YEDL YHHY YIAC YJAB YJGM YNCA YPEA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
18_F 61_G 1.10 0.00
38_Q 4_E 1.07 0.00
43_K 68_G 0.88 0.00
18_F 19_E 0.88 0.00
56_E 11_P 0.82 0.00
6_T 119_G 0.81 0.00
46_D 56_D 0.79 0.00
52_S 75_F 0.78 0.00
44_S 75_F 0.77 0.00
59_A 86_G 0.77 0.00
68_T 106_Q 0.76 0.00
30_V 82_R 0.76 0.00
49_Q 86_G 0.73 0.00
63_A 135_T 0.73 0.00
56_E 71_L 0.73 0.00
24_D 91_Q 0.71 0.00
8_I 125_C 0.71 0.00
36_A 125_C 0.70 0.00
65_G 76_V 0.70 0.00
14_A 100_L 0.70 0.00
55_I 99_H 0.69 0.00
25_D 68_G 0.69 0.00
56_E 15_E 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.0238 seconds.