May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

SLYA - YDHJ
UniProt: P0A8W2 - P76185
Length: 429
Sequences: 1069
Seq/Len: 2.63
I_Prob: 0.00

SLYA - Transcriptional regulator SlyA
Paralog alert: 0.89 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: MARR MPRA SLYA
YDHJ - Uncharacterized protein YdhJ
Paralog alert: 0.82 [within 20: 0.24] - ratio of genomes with paralogs
Cluster includes: AAEA ACRA ACRE EMRA EMRK MACA MDTA MDTE MDTN YBHG YDHJ YHII YIAV YIBH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
32_T 75_I 0.83 0.00
72_E 88_Q 0.77 0.00
71_E 175_T 0.77 0.00
121_E 143_K 0.76 0.00
76_I 132_Q 0.75 0.00
124_E 68_A 0.75 0.00
75_L 75_I 0.74 0.00
52_L 142_L 0.73 0.00
74_G 61_K 0.71 0.00
118_I 99_A 0.70 0.00
40_I 282_A 0.70 0.00
97_E 95_Q 0.69 0.00
71_E 124_A 0.69 0.00
48_S 208_A 0.69 0.00
129_L 163_T 0.67 0.00
61_P 113_Q 0.67 0.00
48_S 153_E 0.67 0.00
75_L 119_E 0.66 0.00
85_R 148_Q 0.66 0.00
124_E 173_A 0.65 0.00
40_I 275_S 0.65 0.00
59_E 154_I 0.64 0.00
27_L 47_I 0.64 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1606 seconds.