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OPENSEQ.org
ALPA - INTA
UniProt: P33997 - P32053
Length: 483
Sequences: 415
Seq/Len: 0.92
I_Prob: 0.00
ALPA - Prophage CP4-57 regulatory protein AlpA
Paralog alert: 0.55 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: ALPA 		INTA - Prophage CP4-57 integrase
Paralog alert: 0.68 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: FIMB FIME INTA INTB INTD INTE INTF INTQ INTR INTS INTZ XERC XERD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
39_A 53_K 0.96 0.00
41_F 195_P 0.94 0.00
47_L 52_T 0.90 0.00
22_A 149_E 0.89 0.00
10_L 84_K 0.88 0.00
27_Y 155_L 0.85 0.00
43_K 96_V 0.85 0.00
14_A 95_Q 0.84 0.00
21_M 184_Y 0.84 0.00
19_T 305_I 0.83 0.00
50_K 237_C 0.82 0.00
49_V 222_L 0.82 0.00
45_R 362_A 0.81 0.00
19_T 174_L 0.79 0.00
45_R 181_V 0.79 0.00
30_L 318_S 0.79 0.00
44_K 343_A 0.78 0.00
59_I 399_G 0.78 0.00
19_T 17_K 0.76 0.00
59_I 265_S 0.76 0.00
25_T 213_S 0.75 0.00
52_V 87_D 0.73 0.00
10_L 164_A 0.72 0.00
24_A 146_S 0.72 0.00
24_A 352_F 0.72 0.00
59_I 383_R 0.72 0.00
39_A 291_I 0.72 0.00
51_S 26_Y 0.72 0.00
8_R 83_A 0.71 0.00
60_D 260_I 0.70 0.00
52_V 15_A 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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