May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
PABC - RLUA
UniProt: P28305 - P0AA37
Length: 488
Sequences: 327
Seq/Len: 0.69
I_Prob: 0.00
PABC - Aminodeoxychorismate lyase
Paralog alert: 0.66 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: ILVE PABC 		RLUA - Ribosomal large subunit pseudouridine synthase A
Paralog alert: 0.91 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: RLUA RLUB RLUC RLUD RLUE RLUF RSUA TRUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
242_M 153_V 1.32 0.00
195_A 125_Q 1.06 0.00
163_L 131_T 1.03 0.00
21_F 142_V 1.01 0.00
56_S 56_Q 0.97 0.00
94_T 26_V 0.96 0.00
52_R 87_F 0.94 0.00
252_F 89_E 0.94 0.00
237_A 207_Y 0.90 0.00
179_L 71_I 0.90 0.00
7_H 211_M 0.89 0.00
55_I 191_P 0.88 0.00
256_T 23_I 0.87 0.00
172_T 154_L 0.87 0.00
3_L 211_M 0.86 0.00
123_L 16_I 0.86 0.00
231_E 16_I 0.86 0.00
79_L 147_D 0.85 0.00
36_V 134_P 0.85 0.00
241_V 207_Y 0.83 0.00
243_P 173_H 0.82 0.00
241_V 191_P 0.82 0.00
248_G 103_H 0.82 0.00
5_N 198_E 0.81 0.00
116_L 26_V 0.81 0.00
27_T 204_H 0.80 0.00
91_G 114_P 0.80 0.00
164_V 190_A 0.79 0.00
244_V 79_A 0.79 0.00
79_L 203_T 0.79 0.00
12_L 66_A 0.79 0.00
3_L 108_E 0.78 0.00
247_C 200_L 0.78 0.00
163_L 26_V 0.77 0.00
260_Y 135_A 0.77 0.00
77_G 135_A 0.77 0.00
94_T 70_V 0.77 0.00
216_L 105_S 0.77 0.00
241_V 129_Y 0.76 0.00
186_V 187_R 0.76 0.00
8_K 17_L 0.76 0.00
246_A 207_Y 0.76 0.00
241_V 75_L 0.75 0.00
115_R 170_A 0.75 0.00
59_F 19_Q 0.75 0.00
155_E 180_F 0.75 0.00
174_C 46_V 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1131 seconds.