| UniProt: | P0AA41 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13171 | ||
| Length: | 260 (230) | ||
| Sequences: | 5408 | ||
| Seq/Len: | 23.51 |
| TRUC
Paralog alert: 0.91 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: RLUA RLUB RLUC RLUD RLUE RLUF RSUA TRUC |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 128_H | 157_K | 3.748 | 1.00 | |
| 5_L | 60_V | 3.672 | 1.00 | |
| 85_R | 153_E | 3.668 | 1.00 | |
| 205_Q | 218_T | 3.191 | 1.00 | |
| 7_Q | 65_L | 3.189 | 1.00 | |
| 207_S | 218_T | 3.155 | 1.00 | |
| 130_R | 153_E | 3.148 | 1.00 | |
| 99_V | 128_H | 2.937 | 1.00 | |
| 3_E | 15_N | 2.901 | 1.00 | |
| 10_W | 66_S | 2.827 | 1.00 | |
| 87_H | 204_S | 2.807 | 1.00 | |
| 154_L | 168_L | 2.788 | 1.00 | |
| 10_W | 212_F | 2.733 | 1.00 | |
| 98_A | 129_Y | 2.603 | 1.00 | |
| 133_A | 235_G | 2.594 | 1.00 | |
| 13_A | 219_I | 2.539 | 1.00 | |
| 87_H | 151_L | 2.467 | 1.00 | |
| 66_S | 69_A | 2.434 | 1.00 | |
| 15_N | 221_A | 2.412 | 1.00 | |
| 99_V | 126_V | 2.41 | 1.00 | |
| 154_L | 164_L | 2.385 | 1.00 | |
| 209_T | 216_P | 2.315 | 1.00 | |
| 198_R | 226_T | 2.266 | 1.00 | |
| 207_S | 216_P | 2.199 | 1.00 | |
| 102_Y | 170_H | 2.165 | 1.00 | |
| 205_Q | 220_H | 2.114 | 1.00 | |
| 97_E | 130_R | 2.097 | 1.00 | |
| 131_G | 150_G | 2.045 | 1.00 | |
| 126_V | 157_K | 2.025 | 1.00 | |
| 8_D | 210_H | 1.959 | 1.00 | |
| 58_S | 202_H | 1.94 | 1.00 | |
| 76_Q | 81_Q | 1.922 | 1.00 | |
| 75_Q | 79_Q | 1.882 | 1.00 | |
| 83_Q | 207_S | 1.818 | 1.00 | |
| 85_R | 205_Q | 1.811 | 1.00 | |
| 101_D | 126_V | 1.804 | 1.00 | |
| 90_V | 152_V | 1.782 | 1.00 | |
| 35_V | 61_L | 1.779 | 1.00 | |
| 94_L | 150_G | 1.766 | 1.00 | |
| 83_Q | 155_E | 1.764 | 1.00 | |
| 127_T | 154_L | 1.763 | 1.00 | |
| 132_L | 153_E | 1.758 | 1.00 | |
| 88_A | 154_L | 1.757 | 1.00 | |
| 85_R | 155_E | 1.731 | 1.00 | |
| 96_E | 134_T | 1.724 | 1.00 | |
| 101_D | 124_P | 1.71 | 1.00 | |
| 13_A | 62_L | 1.683 | 1.00 | |
| 53_L | 61_L | 1.655 | 1.00 | |
| 152_V | 168_L | 1.63 | 1.00 | |
| 200_M | 227_W | 1.593 | 1.00 | |
| 225_D | 229_Q | 1.58 | 1.00 | |
| 84_K | 156_P | 1.575 | 1.00 | |
| 92_G | 150_G | 1.571 | 1.00 | |
| 87_H | 153_E | 1.55 | 1.00 | |
| 8_D | 11_L | 1.541 | 1.00 | |
| 72_L | 76_Q | 1.531 | 1.00 | |
| 13_A | 60_V | 1.526 | 1.00 | |
| 22_V | 61_L | 1.501 | 1.00 | |
| 128_H | 155_E | 1.501 | 1.00 | |
| 90_V | 168_L | 1.493 | 1.00 | |
| 131_G | 134_T | 1.437 | 1.00 | |
| 70_G | 74_A | 1.428 | 1.00 | |
| 204_S | 220_H | 1.419 | 1.00 | |
| 210_H | 217_L | 1.394 | 0.99 | |
| 56_P | 199_L | 1.377 | 0.99 | |
| 5_L | 219_I | 1.374 | 0.99 | |
| 33_V | 38_T | 1.363 | 0.99 | |
| 104_L | 166_R | 1.337 | 0.99 | |
| 72_L | 75_Q | 1.331 | 0.99 | |
| 196_L | 200_M | 1.281 | 0.99 | |
| 87_H | 223_L | 1.264 | 0.99 | |
| 50_A | 73_L | 1.26 | 0.99 | |
| 50_A | 64_G | 1.258 | 0.99 | |
| 11_L | 208_L | 1.252 | 0.99 | |
| 100_L | 171_L | 1.246 | 0.98 | |
| 76_Q | 209_T | 1.231 | 0.98 | |
| 156_P | 164_L | 1.214 | 0.98 | |
| 168_L | 175_I | 1.209 | 0.98 | |
| 99_V | 157_K | 1.192 | 0.98 | |
| 17_P | 20_W | 1.191 | 0.98 | |
| 134_T | 150_G | 1.185 | 0.98 | |
| 77_F | 156_P | 1.182 | 0.98 | |
| 202_H | 221_A | 1.172 | 0.98 | |
| 39_V | 63_M | 1.16 | 0.97 | |
| 10_W | 69_A | 1.149 | 0.97 | |
| 228_M | 232_S | 1.133 | 0.97 | |
| 34_V | 37_Q | 1.127 | 0.97 | |
| 18_S | 58_S | 1.126 | 0.97 | |
| 88_A | 175_I | 1.126 | 0.97 | |
| 94_L | 152_V | 1.121 | 0.97 | |
| 153_E | 204_S | 1.119 | 0.96 | |
| 68_E | 212_F | 1.118 | 0.96 | |
| 127_T | 167_H | 1.115 | 0.96 | |
| 87_H | 132_L | 1.114 | 0.96 | |
| 20_W | 35_V | 1.111 | 0.96 | |
| 209_T | 214_G | 1.11 | 0.96 | |
| 75_Q | 78_E | 1.102 | 0.96 | |
| 229_Q | 233_Q | 1.099 | 0.96 | |
| 92_G | 173_H | 1.096 | 0.96 | |
| 60_V | 219_I | 1.088 | 0.96 | |
| 100_L | 167_H | 1.084 | 0.96 | |
| 11_L | 210_H | 1.078 | 0.95 | |
| 22_V | 53_L | 1.077 | 0.95 | |
| 10_W | 210_H | 1.069 | 0.95 | |
| 198_R | 202_H | 1.065 | 0.95 | |
| 77_F | 82_I | 1.065 | 0.95 | |
| 93_W | 134_T | 1.062 | 0.95 | |
| 35_V | 63_M | 1.056 | 0.95 | |
| 127_T | 156_P | 1.047 | 0.94 | |
| 18_S | 198_R | 1.042 | 0.94 | |
| 14_V | 35_V | 1.038 | 0.94 | |
| 200_M | 230_A | 1.038 | 0.94 | |
| 71_R | 75_Q | 1.026 | 0.94 | |
| 149_Y | 176_I | 1.022 | 0.93 | |
| 20_W | 38_T | 1.02 | 0.93 | |
| 89_I | 149_Y | 1.008 | 0.93 | |
| 203_A | 206_L | 1.008 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1v9fA | 1 | 0.8962 | 100 | 0.26 | Contact Map | 0.885 |
| 1v9kA | 2 | 0.8615 | 100 | 0.265 | Contact Map | 0.848 |
| 2i82A | 4 | 0.7885 | 100 | 0.31 | Contact Map | 0.919 |
| 2olwA | 2 | 0.7 | 100 | 0.483 | Contact Map | 0.675 |
| 2omlA | 1 | 0.7038 | 100 | 0.496 | Contact Map | 0.684 |
| 4lgtA | 2 | 0.7346 | 100 | 0.506 | Contact Map | 0.548 |
| 3dh3A | 4 | 0.7769 | 100 | 0.523 | Contact Map | 0.456 |
| 1vioA | 2 | 0.7231 | 100 | 0.528 | Contact Map | 0.624 |
| 1kskA | 1 | 0.6808 | 100 | 0.535 | Contact Map | 0.578 |
| 2gmlA | 2 | 0.85 | 100 | 0.558 | Contact Map | 0.716 |
Sequence Conservation (Image Generated using WebLogo v3)