| UniProt: | P32684 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11921 | ||
| Length: | 290 (233) | ||
| Sequences: | 3056 | ||
| Seq/Len: | 13.12 |
| RLUF
Paralog alert: 0.67 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: RLUA RLUB RLUC RLUD RLUE RLUF RSUA TRUC |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 36_N | 50_D | 5.764 | 1.00 | |
| 32_N | 55_N | 5.143 | 1.00 | |
| 34_F | 53_K | 3.919 | 1.00 | |
| 170_K | 178_R | 3.249 | 1.00 | |
| 136_E | 207_R | 2.821 | 1.00 | |
| 72_L | 93_F | 2.688 | 1.00 | |
| 19_C | 24_A | 2.465 | 1.00 | |
| 187_R | 190_R | 2.356 | 1.00 | |
| 12_Y | 46_V | 2.354 | 1.00 | |
| 27_Y | 54_V | 2.11 | 1.00 | |
| 159_I | 191_R | 2.103 | 1.00 | |
| 151_R | 155_A | 2.1 | 1.00 | |
| 188_Q | 192_M | 2.087 | 1.00 | |
| 26_R | 30_Q | 2.072 | 1.00 | |
| 111_Q | 202_K | 2.071 | 1.00 | |
| 10_N | 25_D | 2.056 | 1.00 | |
| 111_Q | 204_E | 2.055 | 1.00 | |
| 40_A | 44_D | 2.042 | 1.00 | |
| 70_I | 223_D | 2.021 | 1.00 | |
| 222_R | 228_E | 1.964 | 1.00 | |
| 70_I | 221_W | 1.922 | 1.00 | |
| 149_F | 198_Y | 1.913 | 1.00 | |
| 138_L | 178_R | 1.884 | 1.00 | |
| 217_P | 220_E | 1.879 | 1.00 | |
| 51_V | 58_L | 1.849 | 1.00 | |
| 101_F | 123_V | 1.843 | 1.00 | |
| 226_D | 230_I | 1.822 | 1.00 | |
| 78_I | 93_F | 1.799 | 1.00 | |
| 13_I | 24_A | 1.746 | 1.00 | |
| 136_E | 178_R | 1.737 | 1.00 | |
| 12_Y | 52_V | 1.727 | 1.00 | |
| 134_E | 180_T | 1.717 | 1.00 | |
| 87_R | 108_K | 1.708 | 1.00 | |
| 140_T | 176_V | 1.691 | 1.00 | |
| 111_Q | 218_L | 1.69 | 1.00 | |
| 34_F | 39_R | 1.68 | 1.00 | |
| 150_I | 154_S | 1.68 | 1.00 | |
| 53_K | 58_L | 1.656 | 1.00 | |
| 153_M | 169_V | 1.569 | 1.00 | |
| 136_E | 180_T | 1.563 | 1.00 | |
| 87_R | 90_I | 1.53 | 1.00 | |
| 13_I | 59_I | 1.521 | 1.00 | |
| 151_R | 154_S | 1.513 | 1.00 | |
| 71_A | 211_V | 1.512 | 1.00 | |
| 134_E | 207_R | 1.51 | 1.00 | |
| 153_M | 196_F | 1.509 | 1.00 | |
| 177_F | 193_C | 1.507 | 1.00 | |
| 134_E | 168_K | 1.462 | 1.00 | |
| 142_D | 199_E | 1.455 | 1.00 | |
| 23_E | 26_R | 1.424 | 1.00 | |
| 76_V | 111_Q | 1.42 | 1.00 | |
| 33_V | 54_V | 1.399 | 0.99 | |
| 82_T | 102_P | 1.377 | 0.99 | |
| 71_A | 113_L | 1.352 | 0.99 | |
| 28_I | 33_V | 1.35 | 0.99 | |
| 90_I | 114_I | 1.341 | 0.99 | |
| 172_E | 178_R | 1.332 | 0.99 | |
| 158_P | 163_V | 1.329 | 0.99 | |
| 123_V | 127_L | 1.323 | 0.99 | |
| 141_V | 198_Y | 1.313 | 0.99 | |
| 110_S | 189_I | 1.31 | 0.99 | |
| 173_A | 176_V | 1.308 | 0.99 | |
| 138_L | 176_V | 1.284 | 0.99 | |
| 169_V | 177_F | 1.282 | 0.99 | |
| 146_T | 149_F | 1.278 | 0.99 | |
| 140_T | 202_K | 1.261 | 0.99 | |
| 69_L | 119_H | 1.258 | 0.99 | |
| 126_I | 208_I | 1.253 | 0.99 | |
| 34_F | 56_G | 1.249 | 0.99 | |
| 26_R | 29_E | 1.249 | 0.99 | |
| 153_M | 193_C | 1.238 | 0.98 | |
| 68_V | 223_D | 1.236 | 0.98 | |
| 139_V | 177_F | 1.233 | 0.98 | |
| 134_E | 182_V | 1.231 | 0.98 | |
| 7_V | 12_Y | 1.229 | 0.98 | |
| 169_V | 179_I | 1.225 | 0.98 | |
| 87_R | 91_V | 1.223 | 0.98 | |
| 110_S | 139_V | 1.212 | 0.98 | |
| 143_K | 198_Y | 1.207 | 0.98 | |
| 82_T | 91_V | 1.204 | 0.98 | |
| 127_L | 208_I | 1.204 | 0.98 | |
| 13_I | 19_C | 1.199 | 0.98 | |
| 8_R | 45_Q | 1.192 | 0.98 | |
| 29_E | 42_I | 1.186 | 0.98 | |
| 164_T | 167_C | 1.171 | 0.98 | |
| 110_S | 190_R | 1.171 | 0.98 | |
| 80_S | 102_P | 1.142 | 0.97 | |
| 158_P | 195_H | 1.139 | 0.97 | |
| 149_F | 196_F | 1.13 | 0.97 | |
| 207_R | 212_S | 1.128 | 0.97 | |
| 46_V | 52_V | 1.121 | 0.97 | |
| 164_T | 188_Q | 1.118 | 0.96 | |
| 125_K | 131_N | 1.117 | 0.96 | |
| 41_T | 44_D | 1.116 | 0.96 | |
| 7_V | 15_E | 1.112 | 0.96 | |
| 117_T | 123_V | 1.109 | 0.96 | |
| 80_S | 91_V | 1.105 | 0.96 | |
| 35_L | 44_D | 1.103 | 0.96 | |
| 225_T | 228_E | 1.099 | 0.96 | |
| 100_V | 116_L | 1.098 | 0.96 | |
| 147_E | 151_R | 1.098 | 0.96 | |
| 124_N | 128_R | 1.096 | 0.96 | |
| 161_G | 191_R | 1.089 | 0.96 | |
| 194_E | 199_E | 1.081 | 0.95 | |
| 210_N | 231_D | 1.08 | 0.95 | |
| 181_L | 188_Q | 1.078 | 0.95 | |
| 109_D | 190_R | 1.077 | 0.95 | |
| 124_N | 127_L | 1.076 | 0.95 | |
| 113_L | 213_L | 1.071 | 0.95 | |
| 138_L | 206_T | 1.058 | 0.95 | |
| 9_L | 28_I | 1.056 | 0.95 | |
| 222_R | 225_T | 1.048 | 0.94 | |
| 141_V | 193_C | 1.047 | 0.94 | |
| 18_I | 54_V | 1.041 | 0.94 | |
| 122_L | 208_I | 1.039 | 0.94 | |
| 121_D | 125_K | 1.031 | 0.94 | |
| 94_V | 116_L | 1.023 | 0.93 | |
| 153_M | 192_M | 1.019 | 0.93 | |
| 69_L | 122_L | 1.018 | 0.93 | |
| 149_F | 152_G | 1.006 | 0.93 | |
| 88_D | 91_V | 1 | 0.92 | |
| 145_I | 177_F | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3dh3A | 4 | 1 | 100 | 0.231 | Contact Map | 0.874 |
| 4lgtA | 2 | 0.8345 | 100 | 0.366 | Contact Map | 0.835 |
| 1vioA | 2 | 0.8172 | 100 | 0.372 | Contact Map | 0.845 |
| 1kskA | 1 | 0.7862 | 100 | 0.378 | Contact Map | 0.755 |
| 2gmlA | 2 | 0.8138 | 100 | 0.382 | Contact Map | 0.788 |
| 2olwA | 2 | 0.6586 | 100 | 0.524 | Contact Map | 0.831 |
| 2omlA | 1 | 0.5828 | 100 | 0.525 | Contact Map | 0.802 |
| 1v9fA | 1 | 0.9414 | 100 | 0.527 | Contact Map | 0.526 |
| 2i82A | 4 | 0.669 | 100 | 0.646 | Contact Map | 0.497 |
| 1v9kA | 2 | 0.6828 | 100 | 0.663 | Contact Map | 0.484 |
Sequence Conservation (Image Generated using WebLogo v3)