| UniProt: | P0AA37 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12609 | ||
| Length: | 219 (207) | ||
| Sequences: | 5925 | ||
| Seq/Len: | 28.62 |
| RLUA
Paralog alert: 0.91 [within 20: 0.03] - ratio of genomes with paralogs Cluster includes: RLUA RLUB RLUC RLUD RLUE RLUF RSUA TRUC |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 95_Q | 153_V | 3.594 | 1.00 | |
| 138_E | 157_I | 3.528 | 1.00 | |
| 17_L | 70_V | 3.381 | 1.00 | |
| 19_Q | 75_L | 3.328 | 1.00 | |
| 199_M | 212_T | 3.038 | 1.00 | |
| 201_T | 212_T | 3.009 | 1.00 | |
| 140_E | 153_V | 2.9 | 1.00 | |
| 110_L | 138_E | 2.814 | 1.00 | |
| 22_H | 76_T | 2.812 | 1.00 | |
| 15_V | 27_N | 2.784 | 1.00 | |
| 154_L | 168_M | 2.713 | 1.00 | |
| 97_V | 198_E | 2.587 | 1.00 | |
| 154_L | 164_L | 2.53 | 1.00 | |
| 22_H | 206_A | 2.475 | 1.00 | |
| 109_G | 139_Y | 2.46 | 1.00 | |
| 97_V | 151_R | 2.436 | 1.00 | |
| 25_V | 213_F | 2.406 | 1.00 | |
| 76_T | 79_A | 2.346 | 1.00 | |
| 110_L | 136_Q | 2.269 | 1.00 | |
| 113_L | 170_A | 2.231 | 1.00 | |
| 27_N | 215_A | 2.199 | 1.00 | |
| 107_A | 144_Y | 2.188 | 1.00 | |
| 203_T | 210_S | 2.182 | 1.00 | |
| 201_T | 210_S | 2.102 | 1.00 | |
| 68_S | 196_H | 2.073 | 1.00 | |
| 112_D | 136_Q | 2.043 | 1.00 | |
| 141_V | 150_A | 2.012 | 1.00 | |
| 199_M | 214_K | 1.991 | 1.00 | |
| 136_Q | 157_I | 1.981 | 1.00 | |
| 86_Q | 91_E | 1.941 | 1.00 | |
| 93_K | 155_K | 1.939 | 1.00 | |
| 108_E | 140_E | 1.894 | 1.00 | |
| 100_V | 152_V | 1.841 | 1.00 | |
| 20_D | 204_H | 1.836 | 1.00 | |
| 85_R | 89_E | 1.832 | 1.00 | |
| 137_T | 154_L | 1.831 | 1.00 | |
| 104_P | 150_A | 1.789 | 1.00 | |
| 95_Q | 155_K | 1.786 | 1.00 | |
| 98_A | 154_L | 1.763 | 1.00 | |
| 95_Q | 199_M | 1.73 | 1.00 | |
| 93_K | 201_T | 1.723 | 1.00 | |
| 112_D | 134_P | 1.69 | 1.00 | |
| 142_V | 153_V | 1.675 | 1.00 | |
| 25_V | 72_V | 1.657 | 1.00 | |
| 102_G | 150_A | 1.651 | 1.00 | |
| 63_L | 71_I | 1.64 | 1.00 | |
| 152_V | 168_M | 1.586 | 1.00 | |
| 46_V | 71_I | 1.536 | 1.00 | |
| 97_V | 153_V | 1.506 | 1.00 | |
| 190_A | 194_L | 1.502 | 1.00 | |
| 20_D | 23_I | 1.493 | 1.00 | |
| 34_S | 71_I | 1.483 | 1.00 | |
| 100_V | 168_M | 1.466 | 1.00 | |
| 138_E | 155_K | 1.464 | 1.00 | |
| 94_K | 156_P | 1.457 | 1.00 | |
| 66_A | 193_L | 1.453 | 1.00 | |
| 82_E | 86_Q | 1.449 | 1.00 | |
| 25_V | 70_V | 1.412 | 1.00 | |
| 80_E | 84_K | 1.41 | 1.00 | |
| 141_V | 144_Y | 1.356 | 0.99 | |
| 198_E | 214_K | 1.325 | 0.99 | |
| 60_V | 74_A | 1.31 | 0.99 | |
| 111_V | 171_L | 1.295 | 0.99 | |
| 204_H | 211_M | 1.286 | 0.99 | |
| 60_V | 83_L | 1.285 | 0.99 | |
| 86_Q | 203_T | 1.268 | 0.99 | |
| 115_L | 166_V | 1.251 | 0.99 | |
| 44_D | 49_R | 1.243 | 0.98 | |
| 168_M | 175_I | 1.231 | 0.98 | |
| 110_L | 157_I | 1.23 | 0.98 | |
| 137_T | 167_H | 1.225 | 0.98 | |
| 23_I | 202_I | 1.219 | 0.98 | |
| 45_S | 48_T | 1.216 | 0.98 | |
| 82_E | 85_R | 1.192 | 0.98 | |
| 17_L | 213_F | 1.175 | 0.98 | |
| 192_R | 196_H | 1.167 | 0.97 | |
| 30_S | 192_R | 1.167 | 0.97 | |
| 29_P | 32_L | 1.158 | 0.97 | |
| 98_A | 175_I | 1.157 | 0.97 | |
| 85_R | 88_R | 1.156 | 0.97 | |
| 30_S | 68_S | 1.153 | 0.97 | |
| 99_R | 149_T | 1.153 | 0.97 | |
| 128_C | 131_T | 1.147 | 0.97 | |
| 70_V | 213_F | 1.129 | 0.97 | |
| 97_V | 217_A | 1.121 | 0.97 | |
| 203_T | 208_G | 1.112 | 0.96 | |
| 50_I | 73_V | 1.111 | 0.96 | |
| 156_P | 164_L | 1.111 | 0.96 | |
| 103_H | 144_Y | 1.109 | 0.96 | |
| 133_K | 160_R | 1.095 | 0.96 | |
| 87_F | 92_P | 1.091 | 0.96 | |
| 196_H | 215_A | 1.085 | 0.96 | |
| 97_V | 142_V | 1.078 | 0.95 | |
| 102_G | 173_H | 1.071 | 0.95 | |
| 81_R | 85_R | 1.056 | 0.95 | |
| 197_A | 200_L | 1.053 | 0.95 | |
| 121_N | 124_K | 1.04 | 0.94 | |
| 23_I | 204_H | 1.03 | 0.94 | |
| 78_A | 206_A | 1.028 | 0.94 | |
| 115_L | 125_Q | 1.024 | 0.93 | |
| 48_T | 51_Q | 1.015 | 0.93 | |
| 149_T | 176_L | 1.012 | 0.93 | |
| 104_P | 173_H | 1.008 | 0.93 | |
| 87_F | 156_P | 1.006 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2i82A | 4 | 0.9909 | 100 | 0.111 | Contact Map | 0.915 |
| 1v9fA | 1 | 0.9772 | 100 | 0.15 | Contact Map | 0.901 |
| 1v9kA | 2 | 0.9315 | 100 | 0.158 | Contact Map | 0.862 |
| 2olwA | 2 | 0.8813 | 100 | 0.376 | Contact Map | 0.646 |
| 2omlA | 1 | 0.7991 | 100 | 0.383 | Contact Map | 0.672 |
| 4lgtA | 2 | 0.8904 | 100 | 0.423 | Contact Map | 0.532 |
| 1vioA | 2 | 0.8767 | 100 | 0.451 | Contact Map | 0.628 |
| 3dh3A | 4 | 0.8219 | 100 | 0.454 | Contact Map | 0.483 |
| 1kskA | 1 | 0.8493 | 100 | 0.46 | Contact Map | 0.579 |
| 2gmlA | 2 | 0.8721 | 100 | 0.466 | Contact Map | 0.698 |
Sequence Conservation (Image Generated using WebLogo v3)