| UniProt: | P0AA43 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12044 | ||
| Length: | 231 (229) | ||
| Sequences: | 7074 | ||
| Seq/Len: | 30.89 |
| RSUA
Paralog alert: 0.95 [within 20: 0.07] - ratio of genomes with paralogs Cluster includes: RLUA RLUB RLUC RLUD RLUE RLUF RSUA TRUC |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 30_D | 45_H | 5.175 | 1.00 | |
| 131_T | 175_R | 4.124 | 1.00 | |
| 55_A | 108_L | 3.712 | 1.00 | |
| 167_E | 175_R | 3.711 | 1.00 | |
| 28_T | 48_A | 3.233 | 1.00 | |
| 26_R | 50_D | 2.965 | 1.00 | |
| 165_V | 179_S | 2.883 | 1.00 | |
| 58_H | 113_D | 2.593 | 1.00 | |
| 61_R | 114_D | 2.514 | 1.00 | |
| 129_E | 177_T | 2.319 | 1.00 | |
| 83_V | 109_V | 2.318 | 1.00 | |
| 133_L | 173_Q | 2.302 | 1.00 | |
| 34_V | 39_F | 2.189 | 1.00 | |
| 169_I | 175_R | 2.048 | 1.00 | |
| 176_L | 190_F | 2.019 | 1.00 | |
| 133_L | 175_R | 2.012 | 1.00 | |
| 131_T | 177_T | 1.988 | 1.00 | |
| 56_Q | 59_G | 1.903 | 1.00 | |
| 174_V | 190_F | 1.889 | 1.00 | |
| 6_F | 41_L | 1.875 | 1.00 | |
| 20_R | 24_G | 1.868 | 1.00 | |
| 147_Q | 192_A | 1.863 | 1.00 | |
| 13_V | 18_A | 1.807 | 1.00 | |
| 184_H | 187_K | 1.806 | 1.00 | |
| 215_A | 218_E | 1.801 | 1.00 | |
| 29_V | 39_F | 1.793 | 1.00 | |
| 21_E | 49_Y | 1.793 | 1.00 | |
| 101_L | 109_V | 1.776 | 1.00 | |
| 71_Y | 86_F | 1.767 | 1.00 | |
| 131_T | 204_R | 1.753 | 1.00 | |
| 7_I | 18_A | 1.725 | 1.00 | |
| 124_P | 127_H | 1.713 | 1.00 | |
| 114_D | 117_W | 1.677 | 1.00 | |
| 65_L | 86_F | 1.661 | 1.00 | |
| 73_C | 109_V | 1.659 | 1.00 | |
| 163_P | 179_S | 1.647 | 1.00 | |
| 224_E | 228_A | 1.638 | 1.00 | |
| 3_L | 34_V | 1.627 | 1.00 | |
| 69_Q | 106_T | 1.607 | 1.00 | |
| 17_I | 20_R | 1.599 | 1.00 | |
| 134_V | 176_L | 1.577 | 1.00 | |
| 135_T | 173_Q | 1.574 | 1.00 | |
| 106_T | 199_E | 1.569 | 1.00 | |
| 130_K | 178_I | 1.564 | 1.00 | |
| 220_R | 226_E | 1.562 | 1.00 | |
| 185_Q | 189_M | 1.55 | 1.00 | |
| 63_F | 221_P | 1.521 | 1.00 | |
| 146_E | 163_P | 1.504 | 1.00 | |
| 118_S | 122_T | 1.491 | 1.00 | |
| 140_V | 172_T | 1.487 | 1.00 | |
| 96_H | 118_S | 1.466 | 1.00 | |
| 168_V | 172_T | 1.456 | 1.00 | |
| 136_L | 195_N | 1.453 | 1.00 | |
| 176_L | 186_V | 1.452 | 1.00 | |
| 164_A | 176_L | 1.434 | 1.00 | |
| 154_L | 188_R | 1.432 | 1.00 | |
| 146_E | 161_T | 1.421 | 1.00 | |
| 164_A | 178_I | 1.4 | 0.99 | |
| 136_L | 190_F | 1.375 | 0.99 | |
| 165_V | 177_T | 1.374 | 0.99 | |
| 28_T | 33_I | 1.372 | 0.99 | |
| 120_R | 124_P | 1.359 | 0.99 | |
| 29_V | 47_V | 1.354 | 0.99 | |
| 63_F | 219_Y | 1.352 | 0.99 | |
| 149_A | 203_E | 1.341 | 0.99 | |
| 170_T | 173_Q | 1.341 | 0.99 | |
| 64_M | 110_L | 1.338 | 0.99 | |
| 106_T | 201_H | 1.314 | 0.99 | |
| 134_V | 174_V | 1.296 | 0.99 | |
| 22_I | 27_V | 1.288 | 0.99 | |
| 106_T | 216_P | 1.285 | 0.99 | |
| 136_L | 174_V | 1.282 | 0.99 | |
| 178_I | 186_V | 1.268 | 0.99 | |
| 4_D | 19_G | 1.26 | 0.99 | |
| 62_Y | 117_W | 1.249 | 0.99 | |
| 138_S | 195_N | 1.248 | 0.99 | |
| 27_V | 49_Y | 1.229 | 0.98 | |
| 119_H | 123_S | 1.227 | 0.98 | |
| 6_F | 10_Q | 1.219 | 0.98 | |
| 134_V | 197_V | 1.212 | 0.98 | |
| 166_L | 190_F | 1.199 | 0.98 | |
| 155_H | 158_K | 1.194 | 0.98 | |
| 64_M | 108_L | 1.185 | 0.98 | |
| 31_G | 48_A | 1.175 | 0.98 | |
| 73_C | 97_A | 1.175 | 0.98 | |
| 3_L | 22_I | 1.173 | 0.98 | |
| 98_A | 112_T | 1.172 | 0.98 | |
| 75_T | 84_L | 1.154 | 0.97 | |
| 17_I | 21_E | 1.126 | 0.97 | |
| 41_L | 47_V | 1.121 | 0.97 | |
| 23_R | 37_A | 1.121 | 0.97 | |
| 167_E | 177_T | 1.11 | 0.96 | |
| 138_S | 172_T | 1.107 | 0.96 | |
| 42_L | 45_H | 1.105 | 0.96 | |
| 8_A | 15_R | 1.093 | 0.96 | |
| 87_L | 111_M | 1.087 | 0.96 | |
| 116_Q | 120_R | 1.076 | 0.95 | |
| 140_V | 174_V | 1.071 | 0.95 | |
| 64_M | 208_I | 1.058 | 0.95 | |
| 59_G | 62_Y | 1.057 | 0.95 | |
| 68_P | 71_Y | 1.053 | 0.95 | |
| 129_E | 204_R | 1.053 | 0.95 | |
| 13_V | 21_E | 1.048 | 0.94 | |
| 166_L | 176_L | 1.043 | 0.94 | |
| 120_R | 123_S | 1.035 | 0.94 | |
| 137_E | 198_V | 1.029 | 0.94 | |
| 207_G | 229_S | 1.028 | 0.94 | |
| 19_G | 23_R | 1.024 | 0.93 | |
| 220_R | 223_T | 1.023 | 0.93 | |
| 130_K | 179_S | 1.02 | 0.93 | |
| 223_T | 226_E | 1.015 | 0.93 | |
| 75_T | 82_T | 1.009 | 0.93 | |
| 15_R | 19_G | 1.009 | 0.93 | |
| 29_V | 34_V | 1.008 | 0.93 | |
| 7_I | 27_V | 1.008 | 0.93 | |
| 133_L | 169_I | 1.007 | 0.93 | |
| 149_A | 152_V | 1.006 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1vioA | 2 | 0.987 | 100 | 0.101 | Contact Map | 0.775 |
| 1kskA | 1 | 0.987 | 100 | 0.129 | Contact Map | 0.684 |
| 3dh3A | 4 | 0.9697 | 100 | 0.135 | Contact Map | 0.81 |
| 4lgtA | 2 | 0.961 | 100 | 0.145 | Contact Map | 0.721 |
| 1v9fA | 1 | 0.987 | 100 | 0.211 | Contact Map | 0.846 |
| 2gmlA | 2 | 0.7792 | 100 | 0.261 | Contact Map | 0.786 |
| 2omlA | 1 | 0.7273 | 100 | 0.283 | Contact Map | 0.734 |
| 2olwA | 2 | 0.8139 | 100 | 0.286 | Contact Map | 0.796 |
| 1v9kA | 2 | 0.7706 | 100 | 0.377 | Contact Map | 0.773 |
| 2i82A | 4 | 0.8095 | 100 | 0.397 | Contact Map | 0.816 |
Sequence Conservation (Image Generated using WebLogo v3)