May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
MENB - MEND
UniProt: P0ABU0 - P17109
Length: 841
Sequences: 777
Seq/Len: 0.95
I_Prob: 0.00
MENB - 1,4-Dihydroxy-2-naphthoyl-CoA synthase
Paralog alert: 0.65 [within 20: 0.21] - ratio of genomes with paralogs
Cluster includes: CAID MENB PAAF PAAG SCPB 		MEND - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase
Paralog alert: 0.81 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: GCL ILVB ILVG ILVI MEND OXC POXB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
17_D 553_V 0.92 0.00
200_L 505_E 0.91 0.00
278_F 47_F 0.85 0.00
73_I 512_Q 0.84 0.00
151_I 103_L 0.84 0.00
275_Q 313_E 0.83 0.00
68_N 355_Q 0.80 0.00
74_L 454_L 0.80 0.00
164_G 461_P 0.80 0.00
164_G 16_E 0.80 0.00
71_V 519_T 0.78 0.00
17_D 145_A 0.78 0.00
31_T 50_H 0.77 0.00
37_I 282_V 0.77 0.00
173_R 506_L 0.77 0.00
202_N 529_T 0.76 0.00
264_Q 283_V 0.76 0.00
14_E 551_A 0.76 0.00
148_D 305_E 0.75 0.00
261_E 431_A 0.75 0.00
53_V 387_F 0.75 0.00
216_R 463_V 0.74 0.00
71_V 533_I 0.74 0.00
21_G 545_T 0.72 0.00
183_I 13_V 0.71 0.00
197_D 211_Q 0.71 0.00
123_V 135_S 0.71 0.00
16_H 553_V 0.71 0.00
151_I 240_W 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1077 seconds.