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OPENSEQ.org

DAPF - XERC
UniProt: P0A6K1 - P0A8P6
Length: 572
Sequences: 365
Seq/Len: 0.64
I_Prob: 0.00

DAPF - Diaminopimelate epimerase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DAPF
XERC - Tyrosine recombinase XerC
Paralog alert: 0.88 [within 20: 0.25] - ratio of genomes with paralogs
Cluster includes: FIMB FIME INTA INTB INTD INTE INTF INTQ INTR INTS INTZ XERC XERD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
81_A 115_D 1.51 0.00
9_L 123_L 1.44 0.00
242_L 115_D 1.30 0.00
242_L 268_N 1.22 0.00
160_C 228_G 1.17 0.00
81_A 252_E 1.16 0.00
197_V 105_K 1.14 0.00
81_A 268_N 1.13 0.00
55_E 118_D 1.10 0.00
242_L 80_L 1.07 0.00
271_F 84_F 1.06 0.00
203_R 112_K 1.04 0.00
45_L 142_M 1.04 0.00
85_R 116_V 1.02 0.00
258_L 63_S 1.00 0.00
139_Y 277_H 1.00 0.00
9_L 120_N 0.99 0.00
243_P 48_W 0.99 0.00
152_V 11_Y 0.97 0.00
258_L 76_R 0.97 0.00
219_S 144_G 0.96 0.00
14_M 56_V 0.95 0.00
89_L 214_R 0.94 0.00
160_C 248_T 0.94 0.00
98_S 75_L 0.94 0.00
194_M 214_R 0.93 0.00
211_A 270_S 0.93 0.00
177_P 57_R 0.92 0.00
122_N 160_L 0.92 0.00
128_V 213_K 0.92 0.00
242_L 65_R 0.91 0.00
87_K 118_D 0.91 0.00
108_V 296_R 0.91 0.00
82_R 52_D 0.90 0.00
265_V 50_Q 0.90 0.00
242_L 252_E 0.89 0.00
219_S 17_V 0.89 0.00
154_S 263_L 0.88 0.00
196_V 73_L 0.88 0.00
98_S 32_Q 0.88 0.00
42_F 277_H 0.88 0.00
202_I 232_G 0.88 0.00
128_V 194_D 0.87 0.00
27_P 138_M 0.87 0.00
233_L 181_I 0.87 0.00
184_R 274_I 0.87 0.00
63_F 123_L 0.87 0.00
47_V 289_A 0.86 0.00
100_A 124_D 0.86 0.00
42_F 74_A 0.86 0.00
150_C 159_H 0.85 0.00
7_H 267_A 0.85 0.00
68_S 268_N 0.84 0.00
230_Q 231_Q 0.84 0.00
243_P 80_L 0.84 0.00
265_V 105_K 0.83 0.00
81_A 179_L 0.82 0.00
81_A 80_L 0.82 0.00
49_E 218_R 0.82 0.00
49_E 72_S 0.82 0.00
79_C 135_D 0.82 0.00
40_V 84_F 0.82 0.00
219_S 125_I 0.82 0.00
56_L 70_A 0.81 0.00
183_E 136_R 0.81 0.00
239_R 179_L 0.81 0.00
172_V 283_L 0.80 0.00
238_V 175_K 0.80 0.00
219_S 189_I 0.79 0.00
109_T 71_A 0.79 0.00
243_P 115_D 0.79 0.00
50_P 250_M 0.79 0.00
88_G 122_L 0.79 0.00
220_G 146_G 0.79 0.00
231_Q 149_L 0.78 0.00
123_F 86_W 0.78 0.00
59_H 75_L 0.78 0.00
17_D 155_L 0.78 0.00
226_A 250_M 0.78 0.00
14_M 121_R 0.78 0.00
48_V 193_L 0.78 0.00
269_D 72_S 0.78 0.00
168_D 297_G 0.77 0.00
229_I 74_A 0.77 0.00
166_D 86_W 0.77 0.00
196_V 260_V 0.76 0.00
71_A 89_S 0.76 0.00
111_D 224_F 0.76 0.00
68_S 11_Y 0.76 0.00
23_V 142_M 0.76 0.00
47_V 225_A 0.76 0.00
226_A 76_R 0.76 0.00
148_I 52_D 0.76 0.00
152_V 12_L 0.76 0.00
16_V 84_F 0.75 0.00
177_P 81_R 0.75 0.00
171_A 238_H 0.75 0.00
61_R 79_A 0.75 0.00
51_P 215_I 0.75 0.00
87_K 78_S 0.75 0.00
32_R 160_L 0.75 0.00
236_E 138_M 0.75 0.00
154_S 281_Q 0.75 0.00
139_Y 173_G 0.74 0.00
165_D 194_D 0.74 0.00
51_P 209_S 0.74 0.00
196_V 195_L 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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