May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
POTB - POTD
UniProt: P0AFK4 - P0AFK9
Length: 623
Sequences: 7937
Seq/Len: 13.80
I_Prob: 0.00
POTB - Spermidine/putrescine transport system permease protein PotB
Paralog alert: 0.95 [within 20: 0.85] - ratio of genomes with paralogs
Cluster includes: CYST CYSW MALG MODB POTB POTC POTH POTI PSTA PSTC UGPA UGPE YCJO YCJP YDCU YDCV 		POTD - Spermidine/putrescine-binding periplasmic protein
Paralog alert: 0.84 [within 20: 0.19] - ratio of genomes with paralogs
Cluster includes: CYSP MALE MODA POTD POTF SUBI THIB UGPB YCJN YDCS YNJB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.2772 seconds.