May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DUSC - RIMK
UniProt: P33371 - P0C0U4
Length: 615
Sequences: 374
Seq/Len: 0.63
I_Prob: 0.00

DUSC - tRNA-dihydrouridine synthase C
Paralog alert: 0.50 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DUSA DUSB DUSC
RIMK - Ribosomal protein S6 modification protein
Paralog alert: 0.95 [within 20: 0.52] - ratio of genomes with paralogs
Cluster includes: ACCC DDLA DDLB GSHB PUR2 PURK PURT RIMK
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
220_A 124_D 1.19 0.00
106_S 259_M 1.05 0.00
34_V 165_D 1.00 0.00
86_E 82_M 0.97 0.00
207_Q 156_T 0.96 0.00
197_V 124_D 0.96 0.00
310_I 140_V 0.95 0.00
226_G 121_H 0.95 0.00
220_A 25_R 0.95 0.00
220_A 238_R 0.95 0.00
28_L 111_G 0.93 0.00
221_V 91_S 0.92 0.00
5_L 132_M 0.92 0.00
194_N 198_V 0.89 0.00
151_F 156_T 0.88 0.00
237_V 59_D 0.88 0.00
239_Y 128_D 0.88 0.00
155_D 172_A 0.87 0.00
174_Q 180_I 0.87 0.00
301_P 79_Q 0.87 0.00
167_V 131_D 0.86 0.00
23_V 59_D 0.86 0.00
165_L 116_V 0.84 0.00
197_V 132_M 0.84 0.00
305_R 158_Q 0.83 0.00
260_E 159_A 0.83 0.00
96_C 41_I 0.83 0.00
220_A 280_G 0.81 0.00
221_V 231_E 0.80 0.00
152_E 131_D 0.79 0.00
176_Y 235_K 0.79 0.00
34_V 108_A 0.79 0.00
5_L 59_D 0.79 0.00
79_E 228_Q 0.79 0.00
75_Q 108_A 0.77 0.00
253_L 59_D 0.77 0.00
146_S 122_S 0.77 0.00
242_P 156_T 0.76 0.00
103_V 256_P 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1952 seconds.