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OPENSEQ.org

CBRA - YGCQ
UniProt: P31456 - Q46907
Length: 640
Sequences: 366
Seq/Len: 0.65
I_Prob: 0.00

CBRA - Protein CbrA
Paralog alert: 0.83 [within 20: 0.32] - ratio of genomes with paralogs
Cluster includes: CBRA FIXC UBIF UBIH VISC YDIS YGCN
YGCQ - Putative electron transfer flavoprotein subunit YgcQ
Paralog alert: 0.43 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: FIXB YDIR YGCQ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
83_V 196_V 1.26 0.00
8_I 61_L 1.25 0.00
130_D 89_S 1.22 0.00
199_T 184_E 1.15 0.00
274_A 272_V 1.14 0.00
175_V 194_A 1.11 0.00
170_Q 90_L 1.11 0.00
154_A 227_I 1.11 0.00
290_L 179_E 1.08 0.00
271_I 169_R 1.08 0.00
209_D 65_G 1.02 0.00
127_W 161_T 1.01 0.00
148_A 180_A 1.01 0.00
273_E 72_S 1.01 0.00
100_R 187_M 1.01 0.00
276_G 203_V 1.00 0.00
286_I 170_R 1.00 0.00
155_D 173_V 1.00 0.00
7_A 98_R 0.99 0.00
14_A 159_N 0.99 0.00
37_C 172_L 0.99 0.00
152_V 279_T 0.98 0.00
317_K 91_D 0.96 0.00
199_T 199_S 0.95 0.00
14_A 268_D 0.95 0.00
22_L 199_S 0.95 0.00
203_S 209_D 0.94 0.00
273_E 82_A 0.94 0.00
155_D 176_Q 0.94 0.00
262_V 250_I 0.94 0.00
155_D 202_R 0.93 0.00
228_T 194_A 0.93 0.00
30_A 65_G 0.93 0.00
278_I 199_S 0.93 0.00
8_I 260_S 0.93 0.00
9_I 194_A 0.93 0.00
103_F 124_Q 0.92 0.00
168_D 227_I 0.92 0.00
203_S 111_Q 0.92 0.00
132_K 244_S 0.92 0.00
145_H 273_V 0.91 0.00
126_I 184_E 0.89 0.00
11_L 60_V 0.89 0.00
17_A 69_D 0.89 0.00
131_D 60_V 0.89 0.00
154_A 188_L 0.89 0.00
157_A 179_E 0.89 0.00
168_D 244_S 0.88 0.00
98_I 133_L 0.88 0.00
100_R 188_L 0.88 0.00
17_A 254_A 0.87 0.00
136_I 274_L 0.86 0.00
262_V 268_D 0.86 0.00
31_L 177_G 0.86 0.00
157_A 188_L 0.86 0.00
75_I 172_L 0.86 0.00
88_T 188_L 0.86 0.00
273_E 212_K 0.86 0.00
208_K 178_G 0.86 0.00
98_I 211_E 0.86 0.00
31_L 266_V 0.86 0.00
152_V 146_A 0.85 0.00
159_S 221_L 0.85 0.00
133_W 235_A 0.85 0.00
283_L 77_W 0.85 0.00
133_W 190_E 0.85 0.00
138_R 209_D 0.85 0.00
304_P 254_A 0.84 0.00
23_A 187_M 0.84 0.00
17_A 273_V 0.84 0.00
126_I 172_L 0.84 0.00
131_D 82_A 0.84 0.00
276_G 263_D 0.84 0.00
162_R 151_L 0.83 0.00
222_D 185_I 0.83 0.00
317_K 66_T 0.83 0.00
30_A 239_A 0.83 0.00
31_L 89_S 0.83 0.00
305_E 224_E 0.83 0.00
88_T 250_I 0.83 0.00
278_I 192_L 0.83 0.00
57_S 250_I 0.83 0.00
140_D 194_A 0.82 0.00
77_S 172_L 0.81 0.00
203_S 184_E 0.81 0.00
248_E 143_V 0.81 0.00
194_F 273_V 0.81 0.00
25_K 82_A 0.81 0.00
305_E 172_L 0.81 0.00
242_G 243_N 0.81 0.00
128_R 171_V 0.81 0.00
192_C 181_D 0.81 0.00
17_A 213_V 0.81 0.00
30_A 179_E 0.80 0.00
129_E 171_V 0.80 0.00
216_G 102_W 0.80 0.00
295_I 188_L 0.80 0.00
154_A 279_T 0.80 0.00
11_L 277_L 0.80 0.00
155_D 203_V 0.80 0.00
304_P 127_A 0.80 0.00
284_E 234_A 0.79 0.00
28_V 262_A 0.79 0.00
205_S 199_S 0.79 0.00
29_I 170_R 0.79 0.00
161_V 125_A 0.79 0.00
37_C 154_T 0.79 0.00
157_A 194_A 0.79 0.00
187_V 274_L 0.78 0.00
271_I 98_R 0.78 0.00
47_G 165_L 0.78 0.00
208_K 188_L 0.78 0.00
173_K 225_V 0.78 0.00
232_E 194_A 0.78 0.00
159_S 173_V 0.78 0.00
297_R 79_L 0.77 0.00
275_A 179_E 0.77 0.00
152_V 92_I 0.77 0.00
265_K 270_W 0.77 0.00
92_Q 60_V 0.77 0.00
115_V 66_T 0.77 0.00
11_L 171_V 0.77 0.00
284_E 102_W 0.77 0.00
170_Q 194_A 0.77 0.00
22_L 279_T 0.77 0.00
142_W 65_G 0.77 0.00
23_A 188_L 0.76 0.00
332_L 47_A 0.76 0.00
251_T 64_P 0.76 0.00
132_K 266_V 0.76 0.00
146_I 239_A 0.76 0.00
306_K 123_R 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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