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OPENSEQ.org

LIVF - YGIN
UniProt: P22731 - P0ADU2
Length: 341
Sequences: 539
Seq/Len: 1.65
I_Prob: 0.00

LIVF - High-affinity branched-chain amino acid transport ATP-binding protein LivF
Paralog alert: 0.94 [within 20: 0.82] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
YGIN - Probable quinol monooxygenase YgiN
Paralog alert: 0.47 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: LSRG YGIN
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
166_L 68_S 1.17 0.00
99_E 59_S 0.79 0.00
191_F 93_L 0.73 0.00
45_T 101_Q 0.73 0.00
45_T 97_I 0.72 0.00
191_F 35_E 0.72 0.00
24_V 88_V 0.69 0.00
67_K 77_Q 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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