| UniProt: | P64461 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13811 | ||
| Length: | 96 (94) | ||
| Sequences: | 1257 | ||
| Seq/Len: | 13.37 |
| LSRG
Paralog alert: 0.47 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: LSRG YGIN |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 59_E | 63_A | 2.843 | 1.00 | |
| 58_D | 61_A | 2.652 | 1.00 | |
| 14_K | 17_E | 2.456 | 1.00 | |
| 15_V | 48_S | 2.114 | 1.00 | |
| 4_T | 62_V | 2.087 | 1.00 | |
| 34_G | 61_A | 2.068 | 1.00 | |
| 10_V | 18_F | 1.863 | 1.00 | |
| 36_L | 57_K | 1.853 | 1.00 | |
| 9_N | 84_G | 1.777 | 1.00 | |
| 15_V | 42_Q | 1.728 | 1.00 | |
| 69_P | 73_T | 1.666 | 1.00 | |
| 9_N | 46_V | 1.545 | 1.00 | |
| 73_T | 77_K | 1.544 | 1.00 | |
| 19_I | 23_R | 1.541 | 1.00 | |
| 37_R | 55_A | 1.456 | 1.00 | |
| 9_N | 49_R | 1.434 | 1.00 | |
| 30_V | 35_N | 1.414 | 1.00 | |
| 14_K | 81_L | 1.409 | 1.00 | |
| 25_N | 38_F | 1.406 | 0.99 | |
| 46_V | 49_R | 1.386 | 0.99 | |
| 19_I | 50_F | 1.329 | 0.99 | |
| 11_H | 83_T | 1.301 | 0.99 | |
| 29_S | 66_K | 1.296 | 0.99 | |
| 42_Q | 50_F | 1.292 | 0.99 | |
| 63_A | 67_T | 1.29 | 0.99 | |
| 74_C | 78_L | 1.283 | 0.99 | |
| 60_D | 63_A | 1.279 | 0.99 | |
| 56_Y | 62_V | 1.279 | 0.99 | |
| 67_T | 72_K | 1.272 | 0.99 | |
| 7_E | 49_R | 1.265 | 0.99 | |
| 19_I | 42_Q | 1.263 | 0.99 | |
| 16_D | 20_E | 1.258 | 0.99 | |
| 84_G | 87_K | 1.246 | 0.98 | |
| 17_E | 20_E | 1.234 | 0.98 | |
| 60_D | 64_F | 1.224 | 0.98 | |
| 33_E | 57_K | 1.223 | 0.98 | |
| 29_S | 71_Y | 1.208 | 0.98 | |
| 29_S | 70_H | 1.19 | 0.98 | |
| 10_V | 22_F | 1.189 | 0.98 | |
| 71_Y | 75_V | 1.172 | 0.98 | |
| 62_V | 66_K | 1.156 | 0.97 | |
| 25_N | 74_C | 1.152 | 0.97 | |
| 15_V | 50_F | 1.147 | 0.97 | |
| 59_E | 90_L | 1.137 | 0.97 | |
| 24_Q | 73_T | 1.115 | 0.96 | |
| 28_G | 31_Q | 1.096 | 0.96 | |
| 18_F | 22_F | 1.092 | 0.96 | |
| 21_V | 24_Q | 1.086 | 0.96 | |
| 56_Y | 66_K | 1.078 | 0.95 | |
| 28_G | 70_H | 1.076 | 0.95 | |
| 42_Q | 46_V | 1.073 | 0.95 | |
| 17_E | 81_L | 1.072 | 0.95 | |
| 15_V | 19_I | 1.066 | 0.95 | |
| 10_V | 50_F | 1.022 | 0.93 | |
| 33_E | 61_A | 1.001 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2omoA | 8 | 1 | 99.9 | 0.175 | Contact Map | 0.717 |
| 4dpoA | 2 | 0.9896 | 99.9 | 0.19 | Contact Map | 0.684 |
| 2gffA | 2 | 1 | 99.9 | 0.201 | Contact Map | 0.671 |
| 3mcsA | 2 | 0.9896 | 99.9 | 0.203 | Contact Map | 0.679 |
| 1tuvA | 1 | 0.9896 | 99.9 | 0.204 | Contact Map | 0.721 |
| 4hl9A | 9 | 1 | 99.9 | 0.208 | Contact Map | 0.844 |
| 3bm7A | 1 | 0.9896 | 99.9 | 0.209 | Contact Map | 0.533 |
| 3e8oA | 2 | 1 | 99.9 | 0.211 | Contact Map | 0.56 |
| 3gz7A | 2 | 0.9896 | 99.9 | 0.214 | Contact Map | 0.726 |
| 2pd1A | 4 | 0.9792 | 99.9 | 0.215 | Contact Map | 0.672 |
Sequence Conservation (Image Generated using WebLogo v3)