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OPENSEQ.org

DAPE - YFFB
UniProt: P0AED7 - P24178
Length: 493
Sequences: 412
Seq/Len: 0.84
I_Prob: 0.06

DAPE - Succinyl-diaminopimelate desuccinylase
Paralog alert: 0.89 [within 20: 0.19] - ratio of genomes with paralogs
Cluster includes: ABGA ABGB ALLC ARGE DAPE PEPT YGEY
YFFB - Protein YffB
Paralog alert: 0.78 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: ARSC YFFB YFGD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
187_I 59_G 1.67 0.06
246_I 76_A 1.55 0.04
34_Q 114_F 1.14 0.01
80_N 94_L 1.06 0.01
277_K 57_T 0.99 0.01
142_V 30_H 0.99 0.01
245_V 81_A 0.99 0.01
306_N 83_M 0.96 0.01
48_T 45_F 0.95 0.01
271_V 8_K 0.94 0.01
357_A 47_N 0.94 0.01
83_F 65_L 0.89 0.01
250_L 103_L 0.88 0.01
34_Q 115_F 0.88 0.01
184_N 94_L 0.88 0.01
296_A 64_K 0.87 0.01
313_E 89_I 0.86 0.01
93_F 55_L 0.85 0.01
127_F 42_L 0.85 0.01
29_L 82_L 0.85 0.01
19_S 45_F 0.85 0.01
360_Q 75_D 0.85 0.01
172_V 8_K 0.85 0.01
310_H 85_E 0.84 0.01
143_K 115_F 0.84 0.01
288_L 27_Y 0.84 0.00
89_D 2_V 0.84 0.00
142_V 13_I 0.83 0.00
360_Q 62_W 0.83 0.00
74_D 34_V 0.82 0.00
16_P 25_I 0.82 0.00
291_Q 46_I 0.81 0.00
108_V 47_N 0.80 0.00
305_V 57_T 0.79 0.00
1_M 85_E 0.79 0.00
277_K 23_N 0.79 0.00
294_L 50_G 0.79 0.00
252_V 89_I 0.78 0.00
375_A 100_K 0.77 0.00
185_L 71_N 0.77 0.00
263_T 34_V 0.77 0.00
302_D 108_D 0.77 0.00
62_A 43_N 0.77 0.00
230_S 25_I 0.77 0.00
199_L 38_D 0.76 0.00
238_A 109_S 0.76 0.00
51_F 107_S 0.76 0.00
61_L 34_V 0.76 0.00
224_E 69_T 0.75 0.00
90_G 68_T 0.75 0.00
79_I 96_C 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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