| UniProt: | P0AB96 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12237 | ||
| Length: | 141 (122) | ||
| Sequences: | 2179 | ||
| Seq/Len: | 17.86 |
| ARSC
Paralog alert: 0.78 [within 20: 0.10] - ratio of genomes with paralogs Cluster includes: ARSC YFFB YFGD |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 33_H | 36_E | 3.638 | 1.00 | |
| 41_R | 83_D | 3.165 | 1.00 | |
| 85_M | 92_I | 3.152 | 1.00 | |
| 23_R | 29_P | 2.72 | 1.00 | |
| 77_T | 80_R | 2.51 | 1.00 | |
| 40_T | 43_E | 2.389 | 1.00 | |
| 46_K | 50_D | 2.318 | 1.00 | |
| 41_R | 45_V | 2.145 | 1.00 | |
| 48_I | 82_I | 2.112 | 1.00 | |
| 8_H | 31_I | 1.912 | 1.00 | |
| 70_G | 73_E | 1.827 | 1.00 | |
| 6_I | 97_V | 1.784 | 1.00 | |
| 55_V | 78_D | 1.776 | 1.00 | |
| 35_L | 90_I | 1.764 | 1.00 | |
| 6_I | 19_L | 1.754 | 1.00 | |
| 48_I | 58_L | 1.721 | 1.00 | |
| 76_F | 84_F | 1.661 | 1.00 | |
| 83_D | 87_Q | 1.649 | 1.00 | |
| 5_T | 30_T | 1.633 | 1.00 | |
| 64_E | 68_E | 1.628 | 1.00 | |
| 111_V | 114_E | 1.559 | 1.00 | |
| 41_R | 82_I | 1.559 | 1.00 | |
| 23_R | 28_E | 1.545 | 1.00 | |
| 21_M | 25_S | 1.54 | 1.00 | |
| 65_P | 88_H | 1.538 | 1.00 | |
| 99_T | 102_G | 1.517 | 1.00 | |
| 24_N | 120_Q | 1.516 | 1.00 | |
| 51_M | 58_L | 1.489 | 1.00 | |
| 53_I | 58_L | 1.464 | 1.00 | |
| 20_E | 24_N | 1.451 | 1.00 | |
| 45_V | 82_I | 1.433 | 1.00 | |
| 97_V | 112_V | 1.377 | 0.99 | |
| 48_I | 52_G | 1.364 | 0.99 | |
| 19_L | 31_I | 1.364 | 0.99 | |
| 51_M | 96_I | 1.361 | 0.99 | |
| 39_P | 92_I | 1.313 | 0.99 | |
| 32_I | 43_E | 1.271 | 0.99 | |
| 50_D | 103_T | 1.258 | 0.99 | |
| 14_T | 17_N | 1.219 | 0.98 | |
| 54_S | 57_A | 1.203 | 0.98 | |
| 59_L | 81_L | 1.203 | 0.98 | |
| 42_D | 45_V | 1.203 | 0.98 | |
| 43_E | 46_K | 1.192 | 0.98 | |
| 58_L | 96_I | 1.19 | 0.98 | |
| 47_L | 98_V | 1.168 | 0.97 | |
| 32_I | 37_T | 1.15 | 0.97 | |
| 45_V | 79_D | 1.144 | 0.97 | |
| 8_H | 19_L | 1.123 | 0.97 | |
| 104_R | 115_I | 1.12 | 0.96 | |
| 47_L | 96_I | 1.118 | 0.96 | |
| 15_S | 34_Y | 1.114 | 0.96 | |
| 32_I | 38_P | 1.112 | 0.96 | |
| 63_V | 90_I | 1.108 | 0.96 | |
| 7_Y | 32_I | 1.107 | 0.96 | |
| 8_H | 15_S | 1.086 | 0.96 | |
| 43_E | 98_V | 1.079 | 0.95 | |
| 120_Q | 123_A | 1.077 | 0.95 | |
| 112_V | 116_L | 1.068 | 0.95 | |
| 7_Y | 47_L | 1.065 | 0.95 | |
| 41_R | 86_L | 1.061 | 0.95 | |
| 55_V | 81_L | 1.046 | 0.94 | |
| 56_R | 66_Y | 1.04 | 0.94 | |
| 9_N | 15_S | 1.037 | 0.94 | |
| 44_L | 82_I | 1.035 | 0.94 | |
| 24_N | 121_K | 1.035 | 0.94 | |
| 45_V | 78_D | 1.034 | 0.94 | |
| 65_P | 68_E | 1.028 | 0.94 | |
| 48_I | 55_V | 1.005 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1s3cA | 1 | 1 | 100 | 0.218 | Contact Map | 0.84 |
| 1z3eA | 1 | 0.9362 | 100 | 0.315 | Contact Map | 0.774 |
| 3gkxA | 2 | 0.8227 | 100 | 0.327 | Contact Map | 0.809 |
| 3f0iA | 2 | 0.8227 | 100 | 0.33 | Contact Map | 0.849 |
| 3l78A | 1 | 0.8511 | 100 | 0.331 | Contact Map | 0.659 |
| 3fz4A | 1 | 0.8227 | 100 | 0.333 | Contact Map | 0.724 |
| 2m46A | 1 | 0.8369 | 100 | 0.336 | Contact Map | 0.738 |
| 2kokA | 1 | 0.8227 | 100 | 0.339 | Contact Map | 0.467 |
| 3rdwA | 2 | 0.8298 | 100 | 0.339 | Contact Map | 0.845 |
| 1rw1A | 1 | 0.8014 | 100 | 0.362 | Contact Map | 0.778 |
Sequence Conservation (Image Generated using WebLogo v3)