| UniProt: | P76569 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG14200 | ||
| Length: | 119 (115) | ||
| Sequences: | 2454 | ||
| Seq/Len: | 21.34 |
| YFGD
Paralog alert: 0.78 [within 20: 0.09] - ratio of genomes with paralogs Cluster includes: ARSC YFFB YFGD |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 34_L | 37_E | 3.605 | 1.00 | |
| 42_A | 85_Q | 3.356 | 1.00 | |
| 87_M | 94_M | 2.849 | 1.00 | |
| 24_K | 30_P | 2.612 | 1.00 | |
| 79_S | 82_A | 2.487 | 1.00 | |
| 41_D | 44_T | 2.437 | 1.00 | |
| 47_D | 51_I | 2.109 | 1.00 | |
| 42_A | 46_R | 2.067 | 1.00 | |
| 49_L | 84_I | 1.997 | 1.00 | |
| 72_N | 75_D | 1.993 | 1.00 | |
| 57_A | 80_E | 1.814 | 1.00 | |
| 9_H | 32_V | 1.777 | 1.00 | |
| 7_I | 99_V | 1.738 | 1.00 | |
| 36_L | 92_K | 1.699 | 1.00 | |
| 85_Q | 89_D | 1.662 | 1.00 | |
| 101_A | 104_K | 1.656 | 1.00 | |
| 6_K | 31_E | 1.579 | 1.00 | |
| 113_Q | 116_E | 1.566 | 1.00 | |
| 66_D | 70_E | 1.559 | 1.00 | |
| 67_L | 90_N | 1.541 | 1.00 | |
| 46_R | 84_I | 1.524 | 1.00 | |
| 7_I | 20_L | 1.5 | 1.00 | |
| 21_N | 25_E | 1.489 | 1.00 | |
| 22_L | 26_N | 1.482 | 1.00 | |
| 49_L | 60_L | 1.476 | 1.00 | |
| 40_A | 94_M | 1.46 | 1.00 | |
| 78_L | 86_A | 1.434 | 1.00 | |
| 24_K | 29_E | 1.431 | 1.00 | |
| 42_A | 84_I | 1.417 | 1.00 | |
| 99_V | 114_V | 1.398 | 0.99 | |
| 33_V | 44_T | 1.398 | 0.99 | |
| 52_L | 60_L | 1.392 | 0.99 | |
| 51_I | 105_A | 1.377 | 0.99 | |
| 15_K | 18_E | 1.368 | 0.99 | |
| 20_L | 32_V | 1.333 | 0.99 | |
| 33_V | 38_T | 1.276 | 0.99 | |
| 49_L | 53_G | 1.233 | 0.98 | |
| 48_L | 98_I | 1.23 | 0.98 | |
| 60_L | 98_I | 1.208 | 0.98 | |
| 54_M | 60_L | 1.208 | 0.98 | |
| 44_T | 100_V | 1.207 | 0.98 | |
| 52_L | 98_I | 1.203 | 0.98 | |
| 13_C | 96_R | 1.2 | 0.98 | |
| 106_R | 117_I | 1.188 | 0.98 | |
| 61_M | 87_M | 1.185 | 0.98 | |
| 56_S | 59_E | 1.179 | 0.98 | |
| 44_T | 47_D | 1.17 | 0.97 | |
| 48_L | 100_V | 1.122 | 0.97 | |
| 43_A | 46_R | 1.119 | 0.96 | |
| 61_M | 83_L | 1.095 | 0.96 | |
| 10_N | 16_S | 1.093 | 0.96 | |
| 9_H | 20_L | 1.087 | 0.96 | |
| 46_R | 81_E | 1.06 | 0.95 | |
| 45_L | 84_I | 1.058 | 0.95 | |
| 111_P | 115_L | 1.044 | 0.94 | |
| 67_L | 70_E | 1.041 | 0.94 | |
| 65_E | 92_K | 1.033 | 0.94 | |
| 7_I | 16_S | 1.013 | 0.93 | |
| 67_L | 92_K | 1.011 | 0.93 | |
| 112_E | 115_L | 1.004 | 0.93 | |
| 8_Y | 48_L | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1s3cA | 1 | 0.9832 | 100 | 0.158 | Contact Map | 0.854 |
| 3gkxA | 2 | 0.9832 | 100 | 0.172 | Contact Map | 0.834 |
| 1z3eA | 1 | 0.9748 | 100 | 0.178 | Contact Map | 0.806 |
| 3rdwA | 2 | 0.9916 | 100 | 0.182 | Contact Map | 0.848 |
| 3fz4A | 1 | 0.9748 | 100 | 0.186 | Contact Map | 0.736 |
| 3f0iA | 2 | 0.9748 | 100 | 0.187 | Contact Map | 0.865 |
| 2m46A | 1 | 0.9916 | 100 | 0.189 | Contact Map | 0.766 |
| 2kokA | 1 | 0.9664 | 100 | 0.192 | Contact Map | 0.485 |
| 3l78A | 1 | 0.9664 | 100 | 0.196 | Contact Map | 0.671 |
| 1rw1A | 1 | 0.9496 | 100 | 0.21 | Contact Map | 0.81 |
Sequence Conservation (Image Generated using WebLogo v3)