| UniProt: | P24178 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11147 | ||
| Length: | 118 (115) | ||
| Sequences: | 2338 | ||
| Seq/Len: | 20.33 |
| YFFB
Paralog alert: 0.78 [within 20: 0.09] - ratio of genomes with paralogs Cluster includes: ARSC YFFB YFGD |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 31_D | 34_V | 3.569 | 1.00 | |
| 39_S | 81_A | 3.323 | 1.00 | |
| 83_M | 90_I | 2.86 | 1.00 | |
| 21_E | 27_Y | 2.609 | 1.00 | |
| 75_D | 78_S | 2.443 | 1.00 | |
| 38_D | 41_L | 2.438 | 1.00 | |
| 44_D | 48_E | 2.216 | 1.00 | |
| 39_S | 43_N | 2.108 | 1.00 | |
| 66_D | 69_T | 2.074 | 1.00 | |
| 46_I | 80_A | 2.032 | 1.00 | |
| 4_L | 95_L | 1.786 | 1.00 | |
| 81_A | 85_E | 1.74 | 1.00 | |
| 6_G | 29_F | 1.74 | 1.00 | |
| 49_L | 54_L | 1.664 | 1.00 | |
| 60_T | 64_K | 1.658 | 1.00 | |
| 3_T | 28_R | 1.657 | 1.00 | |
| 37_L | 90_I | 1.647 | 1.00 | |
| 33_R | 88_A | 1.642 | 1.00 | |
| 110_S | 113_Q | 1.573 | 1.00 | |
| 74_T | 82_L | 1.553 | 1.00 | |
| 30_H | 41_L | 1.546 | 1.00 | |
| 46_I | 54_L | 1.523 | 1.00 | |
| 43_N | 80_A | 1.507 | 1.00 | |
| 97_V | 101_P | 1.485 | 1.00 | |
| 21_E | 26_D | 1.438 | 1.00 | |
| 19_W | 23_N | 1.428 | 1.00 | |
| 4_L | 17_R | 1.423 | 1.00 | |
| 12_T | 15_K | 1.41 | 1.00 | |
| 18_R | 22_A | 1.399 | 0.99 | |
| 39_S | 80_A | 1.394 | 0.99 | |
| 61_T | 86_M | 1.347 | 0.99 | |
| 49_L | 94_L | 1.336 | 0.99 | |
| 95_L | 111_Y | 1.33 | 0.99 | |
| 48_E | 102_M | 1.317 | 0.99 | |
| 54_L | 94_L | 1.289 | 0.99 | |
| 17_R | 29_F | 1.289 | 0.99 | |
| 55_L | 83_M | 1.28 | 0.99 | |
| 30_H | 35_D | 1.273 | 0.99 | |
| 45_F | 94_L | 1.249 | 0.99 | |
| 103_L | 114_F | 1.196 | 0.98 | |
| 45_F | 96_C | 1.192 | 0.98 | |
| 67_E | 70_R | 1.181 | 0.98 | |
| 51_W | 76_A | 1.178 | 0.98 | |
| 41_L | 44_D | 1.17 | 0.97 | |
| 10_C | 92_R | 1.148 | 0.97 | |
| 7_I | 13_I | 1.125 | 0.97 | |
| 108_D | 112_Q | 1.125 | 0.97 | |
| 40_E | 43_N | 1.123 | 0.97 | |
| 61_T | 64_K | 1.123 | 0.97 | |
| 43_N | 77_A | 1.118 | 0.96 | |
| 41_L | 96_C | 1.116 | 0.96 | |
| 52_E | 62_W | 1.085 | 0.96 | |
| 42_L | 80_A | 1.056 | 0.95 | |
| 19_W | 112_Q | 1.054 | 0.95 | |
| 59_G | 88_A | 1.051 | 0.94 | |
| 19_W | 106_F | 1.049 | 0.94 | |
| 30_H | 36_G | 1.045 | 0.94 | |
| 46_I | 50_G | 1.03 | 0.94 | |
| 57_T | 63_R | 1.02 | 0.93 | |
| 13_I | 32_Y | 1.018 | 0.93 | |
| 39_S | 84_T | 1.013 | 0.93 | |
| 4_L | 13_I | 1.007 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3fz4A | 1 | 0.9661 | 100 | 0.156 | Contact Map | 0.698 |
| 2m46A | 1 | 0.9831 | 100 | 0.159 | Contact Map | 0.705 |
| 1rw1A | 1 | 0.9661 | 100 | 0.162 | Contact Map | 0.773 |
| 3gkxA | 2 | 0.9661 | 100 | 0.168 | Contact Map | 0.806 |
| 2kokA | 1 | 0.9746 | 100 | 0.17 | Contact Map | 0.48 |
| 1s3cA | 1 | 0.9746 | 100 | 0.175 | Contact Map | 0.81 |
| 1z3eA | 1 | 0.9746 | 100 | 0.182 | Contact Map | 0.805 |
| 3f0iA | 2 | 0.9492 | 100 | 0.186 | Contact Map | 0.818 |
| 3l78A | 1 | 0.9746 | 100 | 0.192 | Contact Map | 0.665 |
| 3rdwA | 2 | 0.9576 | 100 | 0.196 | Contact Map | 0.807 |
Sequence Conservation (Image Generated using WebLogo v3)