May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

MLAC - YEHX
UniProt: P0ADV7 - P33360
Length: 519
Sequences: 361
Seq/Len: 0.81
I_Prob: 0.00

MLAC - Probable phospholipid-binding protein MlaC
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: MLAC
YEHX - Putative osmoprotectant uptake system ATP-binding protein YehX
Paralog alert: 0.94 [within 20: 0.63] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
184_L 65_I 1.27 0.00
172_S 135_L 1.20 0.00
115_Q 163_G 1.11 0.00
22_A 214_V 1.06 0.00
207_L 58_I 1.04 0.00
112_Y 135_L 1.03 0.00
119_I 2_I 1.03 0.00
131_V 76_R 0.97 0.00
32_D 32_L 0.97 0.00
183_T 4_F 0.96 0.00
88_A 61_A 0.96 0.00
117_Y 213_V 0.94 0.00
124_P 45_K 0.93 0.00
198_K 65_I 0.93 0.00
195_A 18_N 0.91 0.00
96_A 222_M 0.91 0.00
152_W 211_G 0.91 0.00
30_L 189_V 0.90 0.00
149_D 7_V 0.90 0.00
132_P 22_L 0.89 0.00
31_M 134_Q 0.89 0.00
137_I 218_N 0.89 0.00
81_Y 51_V 0.88 0.00
197_L 75_R 0.88 0.00
101_L 92_V 0.88 0.00
114_G 110_I 0.88 0.00
70_V 111_D 0.87 0.00
22_A 63_E 0.87 0.00
67_Y 90_W 0.86 0.00
107_Q 32_L 0.86 0.00
113_H 35_T 0.86 0.00
84_S 157_L 0.86 0.00
171_V 32_L 0.86 0.00
170_G 184_L 0.85 0.00
123_Q 202_A 0.85 0.00
61_D 235_F 0.85 0.00
145_P 189_V 0.85 0.00
31_M 60_F 0.85 0.00
64_L 69_P 0.85 0.00
64_L 165_L 0.84 0.00
80_Q 6_H 0.83 0.00
33_E 5_S 0.83 0.00
26_N 220_L 0.83 0.00
174_I 70_V 0.83 0.00
183_T 113_R 0.83 0.00
98_R 149_L 0.82 0.00
50_R 184_L 0.82 0.00
152_W 149_L 0.81 0.00
50_R 189_V 0.81 0.00
138_I 212_E 0.81 0.00
49_I 165_L 0.81 0.00
16_L 221_T 0.81 0.00
133_I 24_F 0.81 0.00
68_V 14_Q 0.81 0.00
42_L 163_G 0.80 0.00
172_S 43_T 0.80 0.00
31_M 24_F 0.80 0.00
168_A 198_A 0.80 0.00
102_K 158_M 0.80 0.00
64_L 199_L 0.80 0.00
76_L 198_A 0.80 0.00
56_L 213_V 0.80 0.00
62_Q 76_R 0.79 0.00
32_D 148_A 0.79 0.00
183_T 192_T 0.79 0.00
57_R 53_H 0.79 0.00
112_Y 32_L 0.79 0.00
159_G 29_F 0.79 0.00
158_T 216_Q 0.79 0.00
51_A 119_A 0.79 0.00
73_A 222_M 0.78 0.00
109_L 230_F 0.78 0.00
68_V 113_R 0.78 0.00
98_R 119_A 0.78 0.00
32_D 18_N 0.77 0.00
187_T 212_E 0.77 0.00
121_P 189_V 0.77 0.00
27_P 48_N 0.77 0.00
131_V 2_I 0.77 0.00
182_G 2_I 0.77 0.00
21_A 71_L 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0095 seconds.