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OPENSEQ.org

RHTA - YBIR
UniProt: P0AA67 - P75788
Length: 667
Sequences: 465
Seq/Len: 0.73
I_Prob: 0.00

RHTA - Inner membrane transporter RhtA
Paralog alert: 0.84 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: EAMA RHTA YDDG YEDA YHBE YICL YIJE YTFF
YBIR - Inner membrane protein YbiR
Paralog alert: 0.72 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: ARSB CITT TTDT YBHI YBIR YFJV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
267_L 360_L 1.23 0.00
127_L 42_W 1.12 0.00
43_V 230_A 1.05 0.00
43_V 200_P 1.03 0.00
273_I 242_L 1.01 0.00
187_A 360_L 0.99 0.00
173_E 236_L 0.95 0.00
188_L 353_P 0.92 0.00
128_A 356_L 0.91 0.00
151_A 172_L 0.91 0.00
212_L 283_L 0.90 0.00
258_G 226_L 0.89 0.00
268_A 364_V 0.89 0.00
76_F 208_G 0.88 0.00
88_F 164_A 0.88 0.00
56_I 357_W 0.87 0.00
225_L 95_F 0.87 0.00
55_L 233_F 0.87 0.00
127_L 234_A 0.87 0.00
51_G 216_A 0.87 0.00
190_F 250_L 0.86 0.00
215_A 155_S 0.86 0.00
204_H 172_L 0.84 0.00
161_A 220_K 0.84 0.00
54_I 360_L 0.84 0.00
255_I 80_R 0.83 0.00
110_A 207_L 0.82 0.00
134_F 67_L 0.82 0.00
255_I 208_G 0.81 0.00
271_A 316_A 0.81 0.00
249_A 285_L 0.81 0.00
247_A 28_F 0.80 0.00
158_A 80_R 0.80 0.00
132_L 24_G 0.80 0.00
44_T 227_V 0.79 0.00
273_I 285_L 0.79 0.00
129_V 30_P 0.79 0.00
183_S 166_L 0.79 0.00
22_A 274_N 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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