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OPENSEQ.org

LSRB - RBSD
UniProt: P76142 - P04982
Length: 479
Sequences: 300
Seq/Len: 0.74
I_Prob: 0.00

LSRB - Autoinducer 2-binding protein LsrB
Paralog alert: 0.78 [within 20: 0.15] - ratio of genomes with paralogs
Cluster includes: ALSB ARAF ASCG CRA CYTR DGAL EBGR GALR GALS GNTR IDNR LACI LSRB MALI PURR RBSB RBSR TORT TRER XYLF YCJW YPHF YTFQ
RBSD - D-ribose pyranase
Paralog alert: 0.40 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: FUCM RBSD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
102_L 14_V 1.47 0.00
155_V 109_F 1.42 0.00
162_P 129_A 1.22 0.00
211_Y 54_V 1.18 0.00
33_I 6_V 1.18 0.00
145_A 67_A 1.17 0.00
213_D 48_V 1.17 0.00
90_V 128_Y 1.16 0.00
211_Y 37_T 1.13 0.00
255_V 29_A 1.11 0.00
236_K 109_F 1.09 0.00
146_R 25_V 1.08 0.00
288_M 11_I 1.07 0.00
194_Y 129_A 1.07 0.00
74_V 116_S 1.00 0.00
259_T 56_G 0.99 0.00
264_G 135_A 0.98 0.00
178_I 11_I 0.97 0.00
183_P 24_L 0.96 0.00
121_P 55_L 0.95 0.00
240_V 21_T 0.95 0.00
218_I 64_V 0.94 0.00
239_K 100_E 0.93 0.00
81_V 120_I 0.93 0.00
137_G 104_T 0.93 0.00
260_V 16_S 0.92 0.00
213_D 15_I 0.91 0.00
154_K 100_E 0.90 0.00
102_L 86_T 0.90 0.00
232_A 54_V 0.88 0.00
96_D 11_I 0.88 0.00
47_N 56_G 0.87 0.00
101_A 26_V 0.86 0.00
282_L 113_T 0.86 0.00
284_K 111_Q 0.86 0.00
286_G 53_Q 0.86 0.00
120_K 9_S 0.85 0.00
87_A 138_T 0.85 0.00
244_G 72_E 0.85 0.00
276_V 26_V 0.85 0.00
71_S 7_L 0.84 0.00
62_Y 61_E 0.84 0.00
269_V 108_Q 0.84 0.00
128_I 33_I 0.84 0.00
215_D 21_T 0.84 0.00
33_I 63_Q 0.84 0.00
187_I 113_T 0.83 0.00
241_A 135_A 0.83 0.00
217_I 131_I 0.83 0.00
45_G 23_T 0.83 0.00
208_L 18_L 0.83 0.00
284_K 40_I 0.83 0.00
121_P 126_S 0.83 0.00
177_K 109_F 0.83 0.00
167_Q 17_R 0.83 0.00
198_T 99_I 0.82 0.00
289_K 5_T 0.82 0.00
105_A 19_G 0.82 0.00
138_G 131_I 0.81 0.00
77_I 3_K 0.81 0.00
101_A 100_E 0.81 0.00
235_L 134_C 0.81 0.00
135_Q 100_E 0.81 0.00
271_Q 136_G 0.81 0.00
216_A 137_V 0.81 0.00
270_Q 54_V 0.81 0.00
190_T 88_L 0.80 0.00
176_A 119_V 0.80 0.00
107_Q 116_S 0.80 0.00
30_I 48_V 0.80 0.00
267_D 44_L 0.79 0.00
167_Q 33_I 0.79 0.00
135_Q 104_T 0.79 0.00
232_A 134_C 0.79 0.00
210_A 9_S 0.79 0.00
204_A 81_H 0.79 0.00
184_G 108_Q 0.79 0.00
257_R 119_V 0.79 0.00
235_L 24_L 0.78 0.00
109_G 114_A 0.78 0.00
164_V 114_A 0.78 0.00
207_I 44_L 0.78 0.00
118_D 11_I 0.78 0.00
156_A 138_T 0.77 0.00
289_K 131_I 0.77 0.00
255_V 131_I 0.77 0.00
271_Q 39_R 0.77 0.00
96_D 9_S 0.77 0.00
85_Y 10_D 0.76 0.00
59_D 85_L 0.76 0.00
84_G 83_T 0.76 0.00
31_A 9_S 0.76 0.00
167_Q 113_T 0.75 0.00
214_L 18_L 0.75 0.00
186_E 119_V 0.75 0.00
222_A 110_K 0.75 0.00
281_A 43_A 0.75 0.00
217_I 2_K 0.75 0.00
108_R 4_G 0.74 0.00
107_Q 109_F 0.74 0.00
72_G 118_A 0.74 0.00
92_A 127_P 0.74 0.00
152_K 131_I 0.74 0.00
217_I 19_G 0.74 0.00
186_E 101_I 0.74 0.00
38_G 9_S 0.74 0.00
221_D 32_P 0.74 0.00
83_Q 78_P 0.73 0.00
232_A 78_P 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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