May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
YQIG - Putative outer membrane usher protein YqiG
UniProt: P76655 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG14228
Length: 821 (793)
Sequences: 1302
Seq/Len: 1.64
YQIG
Paralog alert: 0.70 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: ELFC FIMD HTRE SFMD YAGX YBGQ YEHB YFCU YHCD YQIG YRAJ
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
81_C 108_C 4.476 1.00
272_I 284_V 4.305 1.00
664_F 694_V 3.858 1.00
280_A 320_E 3.727 1.00
623_Y 639_S 3.577 1.00
236_Q 250_S 3.312 1.00
654_H 690_V 3.112 1.00
652_A 684_N 3.054 1.00
742_I 783_I 2.968 1.00
344_I 373_W 2.954 1.00
249_F 366_F 2.869 1.00
625_S 637_N 2.726 1.00
281_K 319_E 2.713 1.00
760_V 789_L 2.642 1.00
277_Q 324_R 2.591 1.00
644_F 653_F 2.582 1.00
317_K 325_V 2.559 1.00
319_E 325_V 2.539 1.00
198_Y 214_L 2.465 1.00
647_T 652_A 2.452 1.00
277_Q 326_T 2.451 1.00
344_I 371_F 2.421 1.00
667_D 733_K 2.414 1.00
418_A 464_Y 2.39 1.00
284_V 303_I 2.356 1.00
760_V 778_V 2.336 1.00
758_I 791_L 2.331 1.00
156_G 729_I 2.304 1.00
646_A 651_A 2.259 0.99
493_R 518_L 2.259 0.99
285_S 290_I 2.211 0.99
315_D 327_Q 2.198 0.99
191_A 223_R 2.174 0.99
71_W 80_V 2.159 0.99
665_M 688_I 2.14 0.99
318_V 326_T 2.078 0.99
412_D 432_R 2.077 0.99
57_L 127_Q 2.077 0.99
154_I 665_M 2.065 0.99
382_Y 412_D 2.064 0.99
194_L 221_L 2.051 0.99
54_L 71_W 2.017 0.98
746_I 800_I 2.009 0.98
54_L 121_L 1.984 0.98
643_S 654_H 1.975 0.98
348_T 369_G 1.963 0.98
663_R 729_I 1.962 0.98
649_H 667_D 1.939 0.98
565_Y 577_H 1.892 0.97
285_S 317_K 1.87 0.97
194_L 219_I 1.846 0.97
283_T 290_I 1.835 0.97
186_G 195_R 1.83 0.97
144_W 147_P 1.823 0.97
740_Y 785_D 1.821 0.97
647_T 688_I 1.787 0.96
789_L 800_I 1.786 0.96
622_L 640_W 1.781 0.96
244_F 384_G 1.77 0.96
594_S 610_R 1.769 0.96
667_D 731_Y 1.768 0.96
131_S 297_P 1.745 0.95
668_A 671_T 1.737 0.95
187_V 194_L 1.708 0.95
142_A 307_F 1.7 0.94
37_N 41_F 1.696 0.94
643_S 657_S 1.686 0.94
318_V 328_W 1.681 0.94
193_R 725_T 1.67 0.94
668_A 736_T 1.664 0.94
222_F 231_K 1.661 0.93
661_D 726_E 1.659 0.93
700_T 724_L 1.658 0.93
120_Y 129_S 1.655 0.93
644_F 651_A 1.652 0.93
237_Y 349_A 1.645 0.93
497_Y 517_S 1.643 0.93
648_R 731_Y 1.628 0.93
746_I 778_V 1.628 0.93
620_G 640_W 1.621 0.92
93_T 96_F 1.62 0.92
760_V 791_L 1.615 0.92
712_N 740_Y 1.612 0.92
643_S 690_V 1.612 0.92
253_S 347_T 1.611 0.92
237_Y 249_F 1.605 0.92
233_T 255_K 1.604 0.92
259_N 726_E 1.604 0.92
429_Y 455_D 1.604 0.92
430_S 454_S 1.586 0.91
269_A 340_R 1.584 0.91
180_S 183_G 1.579 0.91
330_V 338_L 1.579 0.91
225_I 228_M 1.578 0.91
56_T 69_L 1.566 0.91
394_S 414_T 1.564 0.90
273_T 302_A 1.553 0.90
430_S 452_R 1.55 0.90
430_S 506_W 1.548 0.90
643_S 663_R 1.544 0.90
664_F 702_L 1.541 0.90
283_T 319_E 1.533 0.89
315_D 329_Q 1.533 0.89
81_C 338_L 1.526 0.89
674_I 683_T 1.523 0.89
196_T 216_F 1.523 0.89
444_S 453_F 1.514 0.88
415_R 429_Y 1.512 0.88
689_G 692_P 1.512 0.88
592_S 612_S 1.504 0.88
657_S 663_R 1.499 0.88
158_F 663_R 1.495 0.88
336_P 366_F 1.491 0.87
754_P 791_L 1.486 0.87
108_C 338_L 1.485 0.87
742_I 802_P 1.479 0.87
119_T 130_I 1.479 0.87
53_S 68_D 1.46 0.86
188_N 195_R 1.453 0.86
480_S 503_N 1.451 0.85
224_P 725_T 1.447 0.85
224_P 231_K 1.445 0.85
379_V 401_F 1.443 0.85
699_T 721_T 1.441 0.85
51_K 68_D 1.433 0.84
272_I 314_L 1.432 0.84
520_R 530_V 1.432 0.84
724_L 730_G 1.431 0.84
159_L 185_A 1.426 0.84
489_L 493_R 1.423 0.84
249_F 349_A 1.422 0.84
152_H 226_P 1.414 0.83
258_E 343_Q 1.406 0.83
755_P 758_I 1.403 0.83
671_T 736_T 1.401 0.83
800_I 815_L 1.395 0.82
155_A 187_V 1.394 0.82
249_F 253_S 1.388 0.82
354_T 681_A 1.38 0.81
517_S 520_R 1.364 0.80
263_P 698_I 1.364 0.80
645_T 729_I 1.362 0.80
57_L 62_R 1.362 0.80
647_T 650_G 1.355 0.80
746_I 772_V 1.354 0.80
739_G 782_G 1.353 0.80
83_T 86_Q 1.353 0.80
617_T 620_G 1.353 0.80
520_R 525_G 1.351 0.79
668_A 674_I 1.349 0.79
316_V 330_V 1.348 0.79
746_I 791_L 1.345 0.79
108_C 330_V 1.345 0.79
341_K 377_N 1.345 0.79
183_G 532_T 1.338 0.78
645_T 663_R 1.333 0.78
224_P 330_V 1.33 0.78
155_A 648_R 1.328 0.78
442_T 487_Q 1.326 0.78
375_W 743_I 1.326 0.78
649_H 731_Y 1.325 0.78
245_D 460_T 1.322 0.77
564_S 580_S 1.321 0.77
122_D 129_S 1.319 0.77
81_C 330_V 1.315 0.77
86_Q 90_L 1.309 0.76
748_L 754_P 1.306 0.76
498_V 516_L 1.305 0.76
652_A 686_Y 1.301 0.76
676_L 691_I 1.298 0.75
279_N 320_E 1.295 0.75
121_L 126_M 1.291 0.75
258_E 345_R 1.288 0.75
283_T 293_Q 1.286 0.75
165_A 638_A 1.285 0.74
617_T 622_L 1.281 0.74
285_S 315_D 1.276 0.74
276_A 296_V 1.273 0.73
155_A 729_I 1.273 0.73
449_A 483_V 1.272 0.73
669_D 683_T 1.269 0.73
495_N 778_V 1.264 0.73
163_L 181_S 1.263 0.73
352_K 365_F 1.263 0.73
530_V 587_R 1.258 0.72
787_N 802_P 1.256 0.72
715_I 718_S 1.255 0.72
58_I 137_L 1.249 0.71
196_T 219_I 1.249 0.71
55_S 58_I 1.248 0.71
746_I 754_P 1.244 0.71
684_N 690_V 1.241 0.71
137_L 252_I 1.24 0.71
318_V 330_V 1.236 0.70
442_T 500_L 1.236 0.70
154_I 729_I 1.233 0.70
725_T 728_A 1.233 0.70
57_L 129_S 1.232 0.70
478_K 506_W 1.216 0.68
646_A 665_M 1.215 0.68
788_K 799_F 1.215 0.68
374_G 407_G 1.214 0.68
223_R 232_L 1.211 0.68
225_I 254_L 1.211 0.68
398_G 407_G 1.209 0.68
430_S 451_Y 1.209 0.68
446_L 484_T 1.207 0.68
683_T 741_Q 1.205 0.67
87_L 92_F 1.204 0.67
667_D 688_I 1.202 0.67
301_F 320_E 1.193 0.66
387_L 461_M 1.189 0.66
741_Q 781_N 1.188 0.66
281_K 293_Q 1.187 0.66
97_I 136_W 1.181 0.65
136_W 300_P 1.179 0.65
669_D 686_Y 1.177 0.65
748_L 752_S 1.173 0.64
569_R 574_E 1.172 0.64
755_P 793_W 1.169 0.64
570_N 573_N 1.168 0.64
47_L 123_K 1.168 0.64
278_T 394_S 1.164 0.64
645_T 665_M 1.162 0.63
114_E 117_I 1.16 0.63
479_E 504_T 1.157 0.63
657_S 729_I 1.152 0.62
382_Y 398_G 1.15 0.62
233_T 237_Y 1.15 0.62
154_I 648_R 1.148 0.62
798_C 817_C 1.147 0.62
652_A 688_I 1.145 0.62
444_S 487_Q 1.145 0.62
489_L 518_L 1.143 0.61
280_A 322_D 1.142 0.61
665_M 731_Y 1.141 0.61
257_D 726_E 1.141 0.61
157_A 187_V 1.14 0.61
488_Y 570_N 1.139 0.61
758_I 793_W 1.136 0.61
412_D 430_S 1.136 0.61
183_G 586_D 1.135 0.61
336_P 436_S 1.132 0.60
355_S 680_R 1.13 0.60
691_I 702_L 1.126 0.60
139_Y 304_T 1.126 0.60
341_K 376_L 1.124 0.60
463_E 466_N 1.124 0.60
744_G 780_L 1.122 0.59
88_T 138_K 1.121 0.59
434_N 447_T 1.12 0.59
647_T 665_M 1.119 0.59
354_T 530_V 1.117 0.59
141_D 264_D 1.117 0.59
270_P 374_G 1.113 0.58
447_T 482_I 1.109 0.58
580_S 610_R 1.106 0.58
414_T 430_S 1.104 0.57
774_D 781_N 1.102 0.57
497_Y 500_L 1.101 0.57
230_A 256_S 1.097 0.57
406_L 519_S 1.096 0.57
114_E 136_W 1.096 0.57
531_S 552_N 1.096 0.57
430_S 449_A 1.095 0.57
230_A 346_Y 1.094 0.56
442_T 449_A 1.092 0.56
196_T 308_N 1.091 0.56
333_N 338_L 1.087 0.56
652_A 665_M 1.081 0.55
131_S 298_P 1.08 0.55
762_D 767_K 1.077 0.55
413_V 496_T 1.074 0.54
382_Y 756_L 1.07 0.54
530_V 585_S 1.064 0.53
666_I 791_L 1.064 0.53
355_S 681_A 1.061 0.53
224_P 326_T 1.057 0.53
266_R 698_I 1.057 0.53
382_Y 506_W 1.057 0.53
372_S 741_Q 1.057 0.53
152_H 191_A 1.056 0.52
265_L 268_Y 1.055 0.52
407_G 435_Y 1.055 0.52
494_L 593_V 1.053 0.52
49_V 608_S 1.052 0.52
310_L 683_T 1.05 0.52
530_V 534_L 1.05 0.52
622_L 641_N 1.048 0.52
155_A 189_L 1.047 0.52
224_P 697_Y 1.046 0.51
150_W 723_T 1.046 0.51
307_F 639_S 1.045 0.51
124_G 763_E 1.045 0.51
130_I 176_S 1.044 0.51
149_L 699_T 1.043 0.51
410_S 434_N 1.041 0.51
739_G 779_Y 1.041 0.51
221_L 234_I 1.041 0.51
649_H 653_F 1.04 0.51
459_V 654_H 1.037 0.50
493_R 593_V 1.037 0.50
298_P 573_N 1.036 0.50
549_L 567_M 1.036 0.50
245_D 430_S 1.036 0.50
374_G 380_S 1.035 0.50
438_R 443_G 1.035 0.50
51_K 70_Q 1.034 0.50
716_E 735_D 1.032 0.50
60_N 619_N 1.03 0.50
567_M 575_I 1.029 0.50
382_Y 432_R 1.027 0.49
252_I 394_S 1.027 0.49
154_I 645_T 1.025 0.49
150_W 756_L 1.025 0.49
270_P 398_G 1.024 0.49
204_F 666_I 1.024 0.49
400_G 410_S 1.023 0.49
352_K 363_Q 1.022 0.49
184_Q 197_D 1.021 0.49
727_G 756_L 1.02 0.49
243_I 396_A 1.02 0.49
313_Q 654_H 1.019 0.49
281_K 295_N 1.019 0.49
230_A 254_L 1.018 0.48
182_Y 538_R 1.017 0.48
196_T 214_L 1.016 0.48
486_N 497_Y 1.015 0.48
353_P 465_I 1.015 0.48
647_T 684_N 1.015 0.48
317_K 327_Q 1.014 0.48
460_T 463_E 1.014 0.48
245_D 506_W 1.014 0.48
494_L 591_W 1.01 0.48
161_Y 642_G 1.007 0.47
216_F 236_Q 1.005 0.47
159_L 651_A 1.004 0.47
193_R 727_G 1.004 0.47
364_P 464_Y 1.003 0.47
158_F 645_T 1.002 0.47
614_Q 621_R 1.001 0.47
664_F 730_G 1.001 0.47
668_A 683_T 1.001 0.47
303_I 692_P 1 0.47
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3rfzB20.95491000.096Contact Map0.687
3fipA20.5921000.448Contact Map0.658
3fcgA20.10841000.833Contact Map0.773
4b0mA10.15961000.849Contact Map0.836
3bwuD10.148699.90.866Contact Map0.873
3l48A50.10699.70.902Contact Map0.951
2xetA20.099999.70.907Contact Map0.847
3e8vA10.091445.80.981Contact Map0.416
4kdwA10.136439.80.981Contact Map0.498
3pe9A40.113319.60.984Contact Map0.711
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 0.0728 seconds.