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OPENSEQ.org

CCMA - LOLA
UniProt: P33931 - P61316
Length: 410
Sequences: 359
Seq/Len: 0.89
I_Prob: 0.00

CCMA - Cytochrome c biogenesis ATP-binding export protein CcmA
Paralog alert: 0.94 [within 20: 0.86] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
LOLA - Outer-membrane lipoprotein carrier protein
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LOLA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
21_G 150_I 0.90 0.00
64_G 79_I 0.89 0.00
24_F 126_N 0.84 0.00
149_L 176_K 0.81 0.00
8_E 177_S 0.80 0.00
106_T 192_P 0.78 0.00
196_I 195_G 0.77 0.00
61_L 19_V 0.76 0.00
196_I 193_P 0.75 0.00
87_I 42_T 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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