May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DDLA - FTSZ
UniProt: P0A6J8 - P0A9A6
Length: 747
Sequences: 514
Seq/Len: 0.81
I_Prob: 0.00

DDLA - D-alanine--D-alanine ligase A
Paralog alert: 0.89 [within 20: 0.61] - ratio of genomes with paralogs
Cluster includes: ACCC DDLA DDLB GSHB PUR2 PURK PURT RIMK
FTSZ - Cell division protein FtsZ
Paralog alert: 0.05 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: FTSZ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
224_I 214_R 1.41 0.00
250_T 198_E 1.29 0.00
40_L 282_I 1.29 0.00
249_L 141_K 1.28 0.00
5_R 155_K 1.26 0.00
150_D 38_E 1.24 0.00
333_Q 38_E 1.23 0.00
203_Q 72_A 1.20 0.00
134_A 38_E 1.19 0.00
295_C 272_L 1.19 0.00
116_L 288_D 1.18 0.00
104_P 250_E 1.12 0.00
156_A 90_A 1.12 0.00
232_A 287_S 1.11 0.00
121_R 213_V 1.09 0.00
18_E 174_R 1.08 0.00
250_T 272_L 1.06 0.00
198_V 116_V 1.04 0.00
293_L 258_R 1.03 0.00
292_T 299_D 1.01 0.00
297_G 230_A 1.00 0.00
162_T 258_R 0.99 0.00
98_T 88_L 0.99 0.00
261_I 282_I 0.98 0.00
33_K 231_S 0.97 0.00
87_L 231_S 0.96 0.00
6_V 241_E 0.95 0.00
339_Y 60_I 0.95 0.00
180_L 116_V 0.93 0.00
339_Y 297_S 0.93 0.00
258_T 164_P 0.93 0.00
137_A 311_V 0.93 0.00
299_A 116_V 0.92 0.00
37_D 151_T 0.92 0.00
36_F 198_E 0.92 0.00
193_V 304_D 0.91 0.00
293_L 115_V 0.90 0.00
150_D 177_S 0.90 0.00
334_A 292_V 0.89 0.00
314_N 310_V 0.89 0.00
6_V 36_G 0.89 0.00
125_L 205_L 0.88 0.00
204_Y 21_G 0.88 0.00
192_S 163_I 0.88 0.00
134_A 230_A 0.88 0.00
337_L 151_T 0.87 0.00
341_D 80_A 0.87 0.00
6_V 76_V 0.87 0.00
121_R 76_V 0.87 0.00
313_I 216_V 0.86 0.00
183_F 176_I 0.86 0.00
348_E 187_D 0.86 0.00
214_F 180_D 0.86 0.00
219_I 150_I 0.86 0.00
341_D 237_E 0.86 0.00
134_A 116_V 0.86 0.00
198_V 35_E 0.86 0.00
231_C 74_P 0.85 0.00
340_T 244_I 0.85 0.00
286_A 277_T 0.85 0.00
214_F 264_I 0.85 0.00
314_N 272_L 0.85 0.00
232_A 244_I 0.85 0.00
244_C 16_I 0.84 0.00
173_E 118_E 0.84 0.00
143_V 254_L 0.84 0.00
266_A 286_A 0.84 0.00
130_S 282_I 0.84 0.00
32_D 214_R 0.84 0.00
223_G 30_V 0.84 0.00
277_E 58_I 0.83 0.00
274_I 88_L 0.83 0.00
303_V 287_S 0.82 0.00
175_E 118_E 0.82 0.00
256_Y 38_E 0.82 0.00
155_I 261_L 0.82 0.00
222_Q 123_L 0.82 0.00
312_V 76_V 0.82 0.00
96_L 231_S 0.82 0.00
338_G 151_T 0.81 0.00
200_S 144_A 0.81 0.00
292_T 228_G 0.81 0.00
339_Y 201_T 0.81 0.00
219_I 41_A 0.81 0.00
25_K 284_A 0.81 0.00
249_L 300_P 0.81 0.00
182_L 76_V 0.81 0.00
23_S 100_I 0.81 0.00
40_L 195_G 0.80 0.00
232_A 162_T 0.80 0.00
193_V 174_R 0.80 0.00
149_R 101_A 0.80 0.00
305_L 191_G 0.80 0.00
264_D 192_A 0.79 0.00
144_T 60_I 0.79 0.00
282_I 213_V 0.79 0.00
224_I 253_D 0.79 0.00
304_F 266_A 0.79 0.00
339_Y 170_K 0.79 0.00
41_L 300_P 0.79 0.00
197_K 92_L 0.79 0.00
116_L 260_V 0.78 0.00
149_R 301_D 0.78 0.00
227_R 244_I 0.78 0.00
232_A 93_E 0.78 0.00
272_A 205_L 0.78 0.00
305_L 116_V 0.77 0.00
303_V 171_V 0.77 0.00
178_L 160_L 0.77 0.00
170_S 60_I 0.77 0.00
220_V 277_T 0.77 0.00
196_S 194_Q 0.77 0.00
133_L 206_M 0.77 0.00
293_L 129_A 0.77 0.00
231_C 141_K 0.77 0.00
87_L 86_D 0.77 0.00
144_T 251_D 0.77 0.00
245_G 123_L 0.77 0.00
163_R 58_I 0.77 0.00
201_E 246_S 0.77 0.00
153_L 296_T 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0585 seconds.