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OPENSEQ.org

DDLB - RSMH
UniProt: P07862 - P60390
Length: 619
Sequences: 524
Seq/Len: 0.87
I_Prob: 0.00

DDLB - D-alanine--D-alanine ligase B
Paralog alert: 0.89 [within 20: 0.46] - ratio of genomes with paralogs
Cluster includes: ACCC DDLA DDLB GSHB PUR2 PURK PURT RIMK
RSMH - Ribosomal RNA small subunit methyltransferase H
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RSMH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
261_D 122_G 1.06 0.00
292_M 161_A 1.05 0.00
190_V 294_V 1.04 0.00
77_E 208_V 1.04 0.00
294_F 199_H 1.01 0.00
176_E 289_P 0.99 0.00
203_I 152_L 0.96 0.00
266_F 161_A 0.93 0.00
109_L 152_L 0.93 0.00
177_V 100_L 0.93 0.00
112_A 219_I 0.91 0.00
18_V 79_F 0.91 0.00
85_G 37_H 0.91 0.00
193_L 240_S 0.91 0.00
294_F 192_P 0.91 0.00
256_I 129_D 0.89 0.00
191_A 307_I 0.88 0.00
209_F 254_R 0.88 0.00
280_H 151_V 0.87 0.00
124_K 284_L 0.85 0.00
182_W 186_V 0.85 0.00
237_L 188_A 0.85 0.00
203_I 159_R 0.85 0.00
258_V 20_N 0.85 0.00
80_G 82_L 0.84 0.00
253_W 151_V 0.83 0.00
247_T 300_A 0.83 0.00
94_S 222_A 0.83 0.00
142_I 224_K 0.83 0.00
204_Q 152_L 0.82 0.00
85_G 239_I 0.81 0.00
230_E 154_T 0.81 0.00
253_W 34_R 0.81 0.00
65_R 56_R 0.81 0.00
154_M 109_L 0.80 0.00
220_E 86_V 0.79 0.00
113_P 182_E 0.79 0.00
140_P 159_R 0.79 0.00
107_A 109_L 0.77 0.00
260_L 162_K 0.77 0.00
78_L 226_S 0.77 0.00
243_K 144_E 0.76 0.00
225_C 207_A 0.76 0.00
28_A 289_P 0.76 0.00
172_Q 300_A 0.76 0.00
112_A 98_I 0.76 0.00
280_H 34_R 0.76 0.00
165_D 16_V 0.75 0.00
224_F 52_L 0.75 0.00
18_V 121_D 0.75 0.00
258_V 72_F 0.75 0.00
35_I 28_I 0.75 0.00
40_V 163_R 0.75 0.00
103_L 87_A 0.75 0.00
5_I 35_G 0.74 0.00
25_A 54_I 0.74 0.00
66_G 199_H 0.74 0.00
109_L 186_V 0.74 0.00
25_A 199_H 0.73 0.00
146_S 155_Y 0.73 0.00
209_F 41_I 0.73 0.00
54_G 51_L 0.73 0.00
228_G 185_E 0.73 0.00
300_R 232_P 0.73 0.00
102_L 303_S 0.73 0.00
240_L 179_R 0.73 0.00
224_F 303_S 0.72 0.00
79_M 253_M 0.72 0.00
88_V 161_A 0.72 0.00
194_G 9_T 0.72 0.00
271_A 30_G 0.72 0.00
256_I 182_E 0.71 0.00
112_A 289_P 0.71 0.00
274_S 37_H 0.71 0.00
193_L 66_T 0.71 0.00
280_H 67_I 0.71 0.00
8_L 80_S 0.71 0.00
212_Y 58_P 0.71 0.00
212_Y 181_K 0.71 0.00
112_A 237_S 0.71 0.00
247_T 279_R 0.71 0.00
108_G 233_G 0.71 0.00
118_T 16_V 0.71 0.00
248_L 182_E 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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