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OPENSEQ.org

DDLB - LPXC
UniProt: P07862 - P0A725
Length: 611
Sequences: 371
Seq/Len: 0.63
I_Prob: 0.00

DDLB - D-alanine--D-alanine ligase B
Paralog alert: 0.89 [within 20: 0.46] - ratio of genomes with paralogs
Cluster includes: ACCC DDLA DDLB GSHB PUR2 PURK PURT RIMK
LPXC - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LPXC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
242_L 96_V 1.50 0.00
179_I 82_A 1.42 0.00
305_A 205_G 1.23 0.00
271_A 231_F 1.17 0.00
111_V 231_F 1.16 0.00
246_T 16_V 1.13 0.00
256_I 262_K 1.12 0.00
298_V 69_E 1.12 0.00
142_I 240_M 1.11 0.00
241_V 185_Q 1.10 0.00
41_D 243_A 1.09 0.00
305_A 84_L 1.08 0.00
112_A 82_A 1.06 0.00
200_S 74_I 1.05 0.00
183_L 211_S 1.04 0.00
294_F 110_P 1.03 0.00
203_I 205_G 1.03 0.00
112_A 89_I 1.03 0.00
280_H 82_A 1.02 0.00
65_R 271_L 1.01 0.00
101_K 88_G 1.01 0.00
294_F 208_L 1.00 0.00
103_L 94_I 1.00 0.00
109_L 115_L 1.00 0.00
38_Y 132_I 0.99 0.00
250_C 205_G 0.99 0.00
93_L 285_V 0.99 0.00
40_V 282_W 0.99 0.00
268_L 210_G 0.99 0.00
84_T 81_N 0.98 0.00
201_I 86_G 0.97 0.00
209_F 258_F 0.97 0.00
292_M 151_N 0.95 0.00
268_L 18_L 0.95 0.00
147_R 297_F 0.95 0.00
245_W 166_I 0.95 0.00
154_M 40_R 0.94 0.00
214_A 110_P 0.94 0.00
90_A 205_G 0.94 0.00
178_L 187_S 0.94 0.00
33_G 135_T 0.94 0.00
151_S 63_C 0.93 0.00
84_T 208_L 0.92 0.00
93_L 154_S 0.92 0.00
294_F 156_D 0.92 0.00
296_Q 109_A 0.92 0.00
214_A 140_D 0.92 0.00
195_E 92_I 0.92 0.00
305_A 295_L 0.91 0.00
93_L 207_C 0.91 0.00
256_I 187_S 0.91 0.00
212_Y 108_A 0.91 0.00
241_V 18_L 0.91 0.00
178_L 260_A 0.91 0.00
247_T 66_L 0.90 0.00
186_P 244_I 0.90 0.00
154_M 295_L 0.90 0.00
109_L 260_A 0.90 0.00
143_V 63_C 0.90 0.00
161_N 134_E 0.89 0.00
190_V 260_A 0.89 0.00
88_V 87_L 0.89 0.00
248_L 165_A 0.89 0.00
203_I 295_L 0.89 0.00
227_A 109_A 0.89 0.00
151_S 62_L 0.88 0.00
259_M 145_A 0.88 0.00
209_F 63_C 0.88 0.00
296_Q 258_F 0.88 0.00
259_M 297_F 0.88 0.00
237_L 112_V 0.87 0.00
109_L 269_N 0.87 0.00
236_N 132_I 0.87 0.00
266_F 95_E 0.87 0.00
237_L 74_I 0.87 0.00
160_E 282_W 0.87 0.00
268_L 215_A 0.86 0.00
61_A 223_V 0.86 0.00
31_R 186_I 0.85 0.00
143_V 68_N 0.85 0.00
251_K 62_L 0.85 0.00
146_S 224_L 0.85 0.00
298_V 72_V 0.84 0.00
293_S 99_P 0.84 0.00
151_S 142_D 0.84 0.00
183_L 74_I 0.84 0.00
154_M 20_T 0.84 0.00
157_V 71_D 0.84 0.00
90_A 198_I 0.84 0.00
37_A 223_V 0.84 0.00
243_K 33_A 0.84 0.00
242_L 22_K 0.84 0.00
157_V 253_N 0.84 0.00
103_L 80_L 0.84 0.00
37_A 208_L 0.84 0.00
218_S 64_T 0.83 0.00
44_E 258_F 0.83 0.00
74_G 87_L 0.83 0.00
227_A 82_A 0.83 0.00
239_A 108_A 0.82 0.00
18_V 213_D 0.82 0.00
183_L 95_E 0.82 0.00
101_K 208_L 0.82 0.00
209_F 235_F 0.82 0.00
50_L 161_F 0.82 0.00
47_V 237_R 0.82 0.00
156_K 64_T 0.82 0.00
141_V 98_A 0.81 0.00
17_E 213_D 0.81 0.00
151_S 99_P 0.81 0.00
26_V 59_D 0.81 0.00
274_S 205_G 0.81 0.00
179_I 166_I 0.81 0.00
4_K 64_T 0.80 0.00
293_S 96_V 0.80 0.00
205_P 82_A 0.80 0.00
269_L 39_Y 0.80 0.00
190_V 114_L 0.80 0.00
209_F 201_L 0.80 0.00
59_F 81_N 0.80 0.00
7_V 263_S 0.80 0.00
295_S 114_L 0.80 0.00
45_V 170_N 0.80 0.00
188_F 166_I 0.80 0.00
166_A 127_K 0.79 0.00
78_L 16_V 0.79 0.00
71_T 108_A 0.79 0.00
248_L 132_I 0.79 0.00
203_I 253_N 0.79 0.00
239_A 217_V 0.78 0.00
177_V 126_A 0.78 0.00
103_L 104_M 0.78 0.00
65_R 260_A 0.78 0.00
283_V 193_G 0.78 0.00
264_G 195_M 0.78 0.00
37_A 182_F 0.78 0.00
213_E 16_V 0.77 0.00
209_F 218_V 0.77 0.00
210_Y 145_A 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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