| UniProt: | P39332 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12527 | ||
| Length: | 131 (119) | ||
| Sequences: | 4412 | ||
| Seq/Len: | 37.08 |
| YJGH
Paralog alert: 0.57 [within 20: 0.09] - ratio of genomes with paralogs Cluster includes: RIDA RUTC TDCF YJGH YOAB |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 54_R | 97_E | 3.491 | 1.00 | |
| 61_H | 71_F | 2.891 | 1.00 | |
| 76_D | 123_K | 2.686 | 1.00 | |
| 50_Q | 93_T | 2.545 | 1.00 | |
| 48_D | 51_Q | 2.539 | 1.00 | |
| 69_C | 73_D | 2.327 | 1.00 | |
| 50_Q | 90_D | 2.316 | 1.00 | |
| 69_C | 128_I | 2.269 | 1.00 | |
| 83_D | 86_N | 2.267 | 1.00 | |
| 54_R | 58_D | 2.236 | 1.00 | |
| 61_H | 65_A | 2.189 | 1.00 | |
| 64_L | 126_A | 2.177 | 1.00 | |
| 111_G | 114_W | 2.122 | 1.00 | |
| 80_F | 110_V | 2.035 | 1.00 | |
| 52_Q | 119_D | 1.991 | 1.00 | |
| 58_D | 98_I | 1.95 | 1.00 | |
| 26_R | 128_I | 1.915 | 1.00 | |
| 37_V | 118_F | 1.911 | 1.00 | |
| 79_S | 91_I | 1.832 | 1.00 | |
| 31_L | 69_C | 1.727 | 1.00 | |
| 77_V | 124_V | 1.724 | 1.00 | |
| 55_L | 59_N | 1.695 | 1.00 | |
| 27_S | 75_I | 1.688 | 1.00 | |
| 60_L | 124_V | 1.645 | 1.00 | |
| 58_D | 61_H | 1.584 | 1.00 | |
| 87_Q | 119_D | 1.535 | 1.00 | |
| 27_S | 127_R | 1.533 | 1.00 | |
| 49_F | 53_V | 1.443 | 1.00 | |
| 38_G | 118_F | 1.434 | 1.00 | |
| 31_L | 67_A | 1.409 | 1.00 | |
| 54_R | 98_I | 1.402 | 0.99 | |
| 114_W | 117_G | 1.388 | 0.99 | |
| 45_P | 118_F | 1.383 | 0.99 | |
| 108_T | 123_K | 1.383 | 0.99 | |
| 70_T | 73_D | 1.364 | 0.99 | |
| 90_D | 93_T | 1.341 | 0.99 | |
| 55_L | 58_D | 1.328 | 0.99 | |
| 81_H | 109_A | 1.314 | 0.99 | |
| 30_L | 127_R | 1.313 | 0.99 | |
| 82_T | 87_Q | 1.303 | 0.99 | |
| 26_R | 29_D | 1.284 | 0.99 | |
| 40_R | 44_T | 1.284 | 0.99 | |
| 38_G | 56_A | 1.282 | 0.99 | |
| 74_I | 99_F | 1.27 | 0.99 | |
| 32_F | 125_I | 1.24 | 0.98 | |
| 87_Q | 90_D | 1.226 | 0.98 | |
| 81_H | 91_I | 1.211 | 0.98 | |
| 74_I | 124_V | 1.179 | 0.98 | |
| 94_V | 97_E | 1.174 | 0.98 | |
| 50_Q | 94_V | 1.163 | 0.97 | |
| 92_M | 107_W | 1.16 | 0.97 | |
| 80_F | 108_T | 1.156 | 0.97 | |
| 64_L | 69_C | 1.117 | 0.96 | |
| 95_K | 107_W | 1.079 | 0.95 | |
| 78_T | 123_K | 1.069 | 0.95 | |
| 33_V | 63_T | 1.066 | 0.95 | |
| 71_F | 74_I | 1.056 | 0.95 | |
| 26_R | 31_L | 1.053 | 0.95 | |
| 61_H | 98_I | 1.048 | 0.94 | |
| 65_A | 70_T | 1.046 | 0.94 | |
| 50_Q | 54_R | 1.026 | 0.94 | |
| 85_E | 111_G | 1.016 | 0.93 | |
| 83_D | 87_Q | 1.011 | 0.93 | |
| 82_T | 119_D | 1.006 | 0.93 | |
| 33_V | 124_V | 1.005 | 0.93 | |
| 57_F | 98_I | 1.005 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1pf5A | 1 | 1 | 100 | 0.067 | Contact Map | 0.741 |
| 3quwA | 1 | 0.9618 | 100 | 0.098 | Contact Map | 0.725 |
| 3m1xA | 1 | 0.9466 | 100 | 0.107 | Contact Map | 0.641 |
| 3r0pA | 6 | 0.9466 | 100 | 0.11 | Contact Map | 0.862 |
| 1jd1A | 6 | 0.9618 | 100 | 0.111 | Contact Map | 0.891 |
| 1xrgA | 3 | 0.9389 | 100 | 0.121 | Contact Map | 0.867 |
| 3k0tA | 3 | 0.9542 | 100 | 0.122 | Contact Map | 0.83 |
| 3v4dA | 6 | 0.9542 | 100 | 0.129 | Contact Map | 0.92 |
| 1qahA | 2 | 0.9695 | 100 | 0.137 | Contact Map | 0.662 |
| 2ig8A | 3 | 0.9771 | 100 | 0.141 | Contact Map | 0.841 |
Sequence Conservation (Image Generated using WebLogo v3)