| UniProt: | P0AF93 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12524 | ||
| Length: | 128 (125) | ||
| Sequences: | 4482 | ||
| Seq/Len: | 35.86 |
| RIDA
Paralog alert: 0.59 [within 20: 0.10] - ratio of genomes with paralogs Cluster includes: RIDA RUTC TDCF YJGH YOAB |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 51_R | 93_A | 3.423 | 1.00 | |
| 58_K | 68_V | 2.805 | 1.00 | |
| 45_D | 48_A | 2.691 | 1.00 | |
| 73_K | 122_E | 2.668 | 1.00 | |
| 47_A | 89_A | 2.551 | 1.00 | |
| 66_L | 70_D | 2.342 | 1.00 | |
| 47_A | 86_T | 2.319 | 1.00 | |
| 66_L | 127_R | 2.179 | 1.00 | |
| 51_R | 55_D | 2.174 | 1.00 | |
| 58_K | 62_E | 2.15 | 1.00 | |
| 98_H | 102_F | 2.113 | 1.00 | |
| 61_V | 125_A | 2.102 | 1.00 | |
| 109_E | 112_R | 2.045 | 1.00 | |
| 77_F | 108_V | 2 | 1.00 | |
| 49_Q | 118_K | 1.983 | 1.00 | |
| 76_V | 87_V | 1.907 | 1.00 | |
| 22_D | 127_R | 1.905 | 1.00 | |
| 33_I | 117_V | 1.851 | 1.00 | |
| 55_D | 94_F | 1.842 | 1.00 | |
| 23_L | 72_V | 1.723 | 1.00 | |
| 74_T | 123_A | 1.716 | 1.00 | |
| 52_Q | 56_N | 1.687 | 1.00 | |
| 83_D | 118_K | 1.685 | 1.00 | |
| 27_I | 66_L | 1.663 | 1.00 | |
| 57_V | 123_A | 1.641 | 1.00 | |
| 23_L | 126_V | 1.621 | 1.00 | |
| 36_N | 39_T | 1.612 | 1.00 | |
| 55_D | 58_K | 1.55 | 1.00 | |
| 3_K | 22_D | 1.533 | 1.00 | |
| 46_V | 50_A | 1.437 | 1.00 | |
| 112_R | 116_D | 1.393 | 0.99 | |
| 51_R | 94_F | 1.375 | 0.99 | |
| 34_P | 117_V | 1.371 | 0.99 | |
| 27_I | 64_A | 1.366 | 0.99 | |
| 67_K | 70_D | 1.363 | 0.99 | |
| 42_V | 117_V | 1.361 | 0.99 | |
| 78_V | 107_C | 1.335 | 0.99 | |
| 106_S | 122_E | 1.329 | 0.99 | |
| 26_M | 126_V | 1.309 | 0.99 | |
| 79_K | 83_D | 1.307 | 0.99 | |
| 52_Q | 55_D | 1.297 | 0.99 | |
| 34_P | 53_S | 1.279 | 0.99 | |
| 86_T | 89_A | 1.271 | 0.99 | |
| 81_L | 109_E | 1.247 | 0.99 | |
| 22_D | 25_N | 1.231 | 0.98 | |
| 28_I | 124_I | 1.212 | 0.98 | |
| 71_I | 95_F | 1.21 | 0.98 | |
| 88_N | 105_R | 1.209 | 0.98 | |
| 78_V | 87_V | 1.193 | 0.98 | |
| 77_F | 106_S | 1.185 | 0.98 | |
| 71_I | 123_A | 1.179 | 0.98 | |
| 90_T | 93_A | 1.145 | 0.97 | |
| 83_D | 86_T | 1.138 | 0.97 | |
| 47_A | 90_T | 1.122 | 0.97 | |
| 91_Y | 105_R | 1.114 | 0.96 | |
| 7_T | 19_Q | 1.101 | 0.96 | |
| 61_V | 66_L | 1.086 | 0.96 | |
| 44_A | 48_A | 1.068 | 0.95 | |
| 80_D | 83_D | 1.067 | 0.95 | |
| 29_T | 60_I | 1.064 | 0.95 | |
| 50_A | 87_V | 1.063 | 0.95 | |
| 68_V | 71_I | 1.063 | 0.95 | |
| 22_D | 27_I | 1.047 | 0.94 | |
| 75_T | 122_E | 1.036 | 0.94 | |
| 62_E | 67_K | 1.034 | 0.94 | |
| 54_L | 94_F | 1.025 | 0.93 | |
| 36_N | 41_E | 1.023 | 0.93 | |
| 79_K | 118_K | 1.021 | 0.93 | |
| 20_G | 60_I | 1.015 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3k0tA | 3 | 0.9766 | 100 | 0.07 | Contact Map | 0.833 |
| 2dyyA | 12 | 0.9766 | 100 | 0.071 | Contact Map | 0.953 |
| 1xrgA | 3 | 0.9688 | 100 | 0.073 | Contact Map | 0.88 |
| 3vczA | 3 | 1 | 100 | 0.075 | Contact Map | 0.89 |
| 2b33A | 2 | 0.9766 | 100 | 0.078 | Contact Map | 0.812 |
| 1qahA | 2 | 0.9766 | 100 | 0.079 | Contact Map | 0.674 |
| 1qu9A | 3 | 1 | 100 | 0.08 | Contact Map | 0.876 |
| 3v4dA | 6 | 0.9766 | 100 | 0.083 | Contact Map | 0.91 |
| 3m1xA | 1 | 0.9688 | 100 | 0.083 | Contact Map | 0.667 |
| 3r0pA | 6 | 0.9688 | 100 | 0.086 | Contact Map | 0.856 |
Sequence Conservation (Image Generated using WebLogo v3)