| UniProt: | P0AGL2 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12757 | ||
| Length: | 129 (126) | ||
| Sequences: | 4470 | ||
| Seq/Len: | 35.48 |
| TDCF
Paralog alert: 0.59 [within 20: 0.10] - ratio of genomes with paralogs Cluster includes: RIDA RUTC TDCF YJGH YOAB |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 51_R | 93_Q | 3.411 | 1.00 | |
| 58_K | 68_V | 2.826 | 1.00 | |
| 73_K | 122_E | 2.685 | 1.00 | |
| 45_D | 48_D | 2.665 | 1.00 | |
| 47_Q | 89_E | 2.561 | 1.00 | |
| 47_Q | 86_T | 2.346 | 1.00 | |
| 66_L | 70_D | 2.344 | 1.00 | |
| 66_L | 127_R | 2.21 | 1.00 | |
| 51_R | 55_E | 2.198 | 1.00 | |
| 58_K | 62_V | 2.157 | 1.00 | |
| 98_H | 102_Y | 2.108 | 1.00 | |
| 109_Q | 112_R | 2.074 | 1.00 | |
| 61_V | 125_A | 2.07 | 1.00 | |
| 77_F | 108_V | 2 | 1.00 | |
| 49_Q | 118_K | 1.988 | 1.00 | |
| 22_D | 127_R | 1.94 | 1.00 | |
| 76_V | 87_I | 1.925 | 1.00 | |
| 33_I | 117_V | 1.859 | 1.00 | |
| 55_E | 94_F | 1.847 | 1.00 | |
| 23_L | 72_I | 1.752 | 1.00 | |
| 74_M | 123_A | 1.742 | 1.00 | |
| 27_V | 66_L | 1.697 | 1.00 | |
| 83_D | 118_K | 1.693 | 1.00 | |
| 52_L | 56_N | 1.674 | 1.00 | |
| 57_V | 123_A | 1.668 | 1.00 | |
| 36_C | 39_T | 1.626 | 1.00 | |
| 23_L | 126_V | 1.588 | 1.00 | |
| 3_K | 22_D | 1.525 | 1.00 | |
| 55_E | 58_K | 1.511 | 1.00 | |
| 46_V | 50_A | 1.435 | 1.00 | |
| 112_R | 116_D | 1.385 | 0.99 | |
| 27_V | 64_A | 1.38 | 0.99 | |
| 42_I | 117_V | 1.374 | 0.99 | |
| 51_R | 94_F | 1.371 | 0.99 | |
| 34_P | 117_V | 1.367 | 0.99 | |
| 67_S | 70_D | 1.341 | 0.99 | |
| 106_S | 122_E | 1.327 | 0.99 | |
| 78_I | 107_C | 1.318 | 0.99 | |
| 79_T | 83_D | 1.299 | 0.99 | |
| 52_L | 55_E | 1.291 | 0.99 | |
| 26_M | 126_V | 1.291 | 0.99 | |
| 86_T | 89_E | 1.281 | 0.99 | |
| 34_P | 53_S | 1.276 | 0.99 | |
| 22_D | 25_S | 1.235 | 0.98 | |
| 81_L | 109_Q | 1.233 | 0.98 | |
| 88_N | 105_R | 1.219 | 0.98 | |
| 28_F | 124_I | 1.217 | 0.98 | |
| 71_I | 95_F | 1.215 | 0.98 | |
| 77_F | 106_S | 1.204 | 0.98 | |
| 78_I | 87_I | 1.198 | 0.98 | |
| 90_V | 93_Q | 1.178 | 0.98 | |
| 71_I | 123_A | 1.176 | 0.98 | |
| 47_Q | 90_V | 1.164 | 0.97 | |
| 44_A | 48_D | 1.127 | 0.97 | |
| 83_D | 86_T | 1.11 | 0.96 | |
| 29_T | 60_I | 1.099 | 0.96 | |
| 7_T | 19_Q | 1.094 | 0.96 | |
| 91_Y | 105_R | 1.092 | 0.96 | |
| 68_V | 71_I | 1.092 | 0.96 | |
| 61_V | 66_L | 1.086 | 0.96 | |
| 80_D | 83_D | 1.074 | 0.95 | |
| 75_T | 122_E | 1.073 | 0.95 | |
| 50_A | 87_I | 1.059 | 0.95 | |
| 22_D | 27_V | 1.058 | 0.95 | |
| 36_C | 41_E | 1.046 | 0.94 | |
| 20_G | 60_I | 1.031 | 0.94 | |
| 47_Q | 51_R | 1.03 | 0.94 | |
| 41_E | 115_K | 1.017 | 0.93 | |
| 79_T | 118_K | 1.006 | 0.93 | |
| 58_K | 94_F | 1.005 | 0.93 | |
| 54_L | 94_F | 1.003 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2dyyA | 12 | 0.969 | 100 | 0.06 | Contact Map | 0.964 |
| 1xrgA | 3 | 0.9612 | 100 | 0.064 | Contact Map | 0.868 |
| 3k0tA | 3 | 0.969 | 100 | 0.065 | Contact Map | 0.832 |
| 3vczA | 3 | 0.9922 | 100 | 0.071 | Contact Map | 0.874 |
| 1qahA | 2 | 0.9767 | 100 | 0.073 | Contact Map | 0.672 |
| 1qu9A | 3 | 0.9922 | 100 | 0.075 | Contact Map | 0.864 |
| 3m1xA | 1 | 0.9612 | 100 | 0.075 | Contact Map | 0.661 |
| 2b33A | 2 | 0.9767 | 100 | 0.075 | Contact Map | 0.805 |
| 3r0pA | 6 | 0.9612 | 100 | 0.078 | Contact Map | 0.858 |
| 3quwA | 1 | 0.969 | 100 | 0.08 | Contact Map | 0.728 |
Sequence Conservation (Image Generated using WebLogo v3)