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ZRAR - Transcriptional regulatory protein ZraR
UniProt: P14375 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10482
Length: 441 (435)
Sequences: 5239
Seq/Len: 12.04

ZRAR
Paralog alert: 0.77 [within 20: 0.19] - ratio of genomes with paralogs
Cluster includes: ATOC DHAR FHLA GLRR HYFR NORR NTRC PRPR PSPF RTCR TYRR YGEV ZRAR
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
288_E 293_R 3.997 1.00
214_E 224_R 3.913 1.00
170_D 313_R 3.677 1.00
199_A 251_V 3.229 1.00
417_T 427_Q 3.211 1.00
287_A 291_A 2.996 1.00
230_V 264_R 2.98 1.00
228_R 263_Q 2.927 1.00
33_A 50_F 2.812 1.00
284_D 287_A 2.758 1.00
155_I 178_V 2.721 1.00
262_V 273_V 2.58 1.00
261_E 272_S 2.486 1.00
261_E 270_I 2.455 1.00
63_D 66_A 2.439 1.00
409_V 413_A 2.393 1.00
203_E 248_M 2.371 1.00
329_R 362_E 2.364 1.00
423_E 426_R 2.334 1.00
37_S 40_Q 2.321 1.00
320_P 346_M 2.316 1.00
229_F 256_A 2.314 1.00
18_C 36_N 2.286 1.00
417_T 424_A 2.285 1.00
341_F 365_V 2.276 1.00
283_R 288_E 2.259 1.00
38_G 62_M 2.255 1.00
407_K 411_L 2.24 1.00
214_E 267_S 2.142 1.00
323_A 341_F 2.141 1.00
342_T 378_S 2.126 1.00
9_L 35_A 2.121 1.00
11_V 41_A 2.073 1.00
238_F 280_A 2.07 1.00
257_I 277_L 2.049 1.00
18_C 34_L 2.049 1.00
354_W 364_A 2.035 1.00
288_E 291_A 2.027 1.00
258_Q 362_E 2.023 1.00
320_P 350_I 2.002 1.00
287_A 290_N 1.976 1.00
214_E 264_R 1.956 1.00
263_Q 270_I 1.935 1.00
101_L 120_A 1.932 1.00
69_K 98_T 1.895 1.00
36_N 40_Q 1.893 1.00
130_E 134_V 1.887 1.00
178_V 309_V 1.869 1.00
416_K 427_Q 1.838 1.00
244_D 283_R 1.804 1.00
151_L 307_I 1.799 1.00
168_H 308_E 1.765 1.00
352_Y 355_P 1.763 1.00
157_L 373_T 1.746 1.00
188_R 274_D 1.733 1.00
233_D 273_V 1.725 1.00
342_T 345_A 1.721 1.00
234_G 274_D 1.702 1.00
39_R 61_E 1.694 1.00
225_R 268_N 1.633 1.00
7_D 31_N 1.628 1.00
233_D 274_D 1.626 1.00
22_Q 34_L 1.613 1.00
256_A 262_V 1.603 1.00
344_Q 379_E 1.6 1.00
413_A 417_T 1.595 1.00
52_L 117_L 1.592 1.00
70_E 73_A 1.588 1.00
377_I 382_L 1.584 1.00
316_R 320_P 1.575 1.00
316_R 353_D 1.573 1.00
151_L 309_V 1.568 1.00
54_L 117_L 1.566 1.00
144_K 321_L 1.566 1.00
213_H 218_F 1.563 1.00
324_G 346_M 1.56 1.00
279_A 302_L 1.553 1.00
145_S 317_E 1.546 1.00
176_E 255_R 1.535 1.00
406_E 438_K 1.521 1.00
433_K 437_A 1.516 1.00
325_H 329_R 1.514 1.00
323_A 365_V 1.488 1.00
55_C 67_T 1.487 1.00
173_T 309_V 1.487 1.00
267_S 271_I 1.486 1.00
168_H 306_A 1.485 1.00
207_E 252_R 1.48 1.00
156_A 185_S 1.471 1.00
346_M 350_I 1.463 1.00
308_E 314_Q 1.457 1.00
243_G 281_T 1.456 1.00
345_A 349_L 1.455 1.00
42_L 70_E 1.45 1.00
46_R 74_L 1.441 1.00
45_V 71_I 1.44 1.00
59_M 62_M 1.423 1.00
244_D 282_H 1.421 1.00
226_E 230_V 1.42 1.00
33_A 44_Q 1.416 1.00
35_A 41_A 1.414 1.00
152_L 155_I 1.413 1.00
413_A 428_L 1.412 1.00
413_A 427_Q 1.409 1.00
213_H 217_A 1.403 0.99
55_C 82_I 1.402 0.99
81_L 116_T 1.401 0.99
35_A 44_Q 1.4 0.99
345_A 379_E 1.396 0.99
22_Q 26_R 1.378 0.99
322_L 326_F 1.378 0.99
285_L 294_F 1.378 0.99
148_M 152_L 1.376 0.99
229_F 237_L 1.375 0.99
53_V 71_I 1.369 0.99
316_R 319_I 1.367 0.99
340_G 376_Y 1.361 0.99
434_T 438_K 1.357 0.99
352_Y 360_E 1.353 0.99
170_D 311_S 1.353 0.99
37_S 61_E 1.351 0.99
150_H 153_S 1.349 0.99
89_V 93_V 1.348 0.99
70_E 74_L 1.34 0.99
206_L 249_M 1.34 0.99
163_A 334_N 1.324 0.99
129_A 134_V 1.324 0.99
75_N 78_I 1.321 0.99
8_I 30_Y 1.314 0.99
143_G 152_L 1.314 0.99
213_H 265_V 1.307 0.99
277_L 302_L 1.294 0.99
330_F 369_V 1.291 0.99
420_N 423_E 1.291 0.99
333_R 366_E 1.28 0.99
163_A 366_E 1.279 0.99
345_A 377_I 1.275 0.99
28_W 114_Q 1.271 0.99
264_R 267_S 1.264 0.99
167_I 278_I 1.253 0.99
327_L 341_F 1.25 0.99
433_K 436_L 1.25 0.99
203_E 246_S 1.25 0.99
422_T 426_R 1.237 0.98
218_F 221_A 1.231 0.98
411_L 415_E 1.229 0.98
348_L 379_E 1.226 0.98
153_S 156_A 1.223 0.98
12_D 59_M 1.223 0.98
435_L 438_K 1.221 0.98
410_I 435_L 1.221 0.98
431_T 434_T 1.216 0.98
327_L 369_V 1.216 0.98
230_V 271_I 1.215 0.98
424_A 427_Q 1.214 0.98
44_Q 50_F 1.212 0.98
437_A 441_R 1.206 0.98
317_E 350_I 1.199 0.98
38_G 67_T 1.197 0.98
341_F 346_M 1.196 0.98
262_V 272_S 1.195 0.98
141_M 178_V 1.189 0.98
91_T 103_Y 1.181 0.98
431_T 437_A 1.179 0.98
54_L 113_L 1.178 0.98
71_I 80_V 1.175 0.98
143_G 155_I 1.174 0.98
421_K 436_L 1.174 0.98
155_I 181_A 1.173 0.98
53_V 78_I 1.171 0.98
367_R 371_L 1.169 0.97
143_G 178_V 1.161 0.97
191_K 234_G 1.158 0.97
38_G 59_M 1.157 0.97
378_S 381_E 1.156 0.97
65_I 95_A 1.149 0.97
412_A 416_K 1.144 0.97
141_M 152_L 1.144 0.97
326_F 330_F 1.136 0.97
58_R 86_Y 1.131 0.97
126_S 130_E 1.128 0.97
403_V 441_R 1.127 0.97
410_I 428_L 1.126 0.97
158_V 305_V 1.124 0.97
24_L 110_F 1.115 0.96
166_L 279_A 1.114 0.96
94_E 98_T 1.113 0.96
167_I 178_V 1.11 0.96
10_V 32_V 1.108 0.96
162_E 188_R 1.105 0.96
217_A 265_V 1.099 0.96
42_L 62_M 1.098 0.96
324_G 328_Q 1.097 0.96
7_D 33_A 1.095 0.96
209_E 225_R 1.091 0.96
420_N 432_R 1.088 0.96
229_F 275_V 1.084 0.96
326_F 365_V 1.082 0.96
197_N 244_D 1.082 0.96
12_D 18_C 1.079 0.95
342_T 376_Y 1.079 0.95
68_L 82_I 1.079 0.95
206_L 210_L 1.078 0.95
319_I 349_L 1.074 0.95
68_L 80_V 1.072 0.95
208_S 218_F 1.072 0.95
260_R 272_S 1.067 0.95
290_N 296_Q 1.066 0.95
208_S 213_H 1.064 0.95
33_A 48_Q 1.062 0.95
38_G 42_L 1.059 0.95
264_R 271_I 1.059 0.95
237_L 277_L 1.058 0.95
347_D 351_H 1.054 0.95
316_R 350_I 1.051 0.94
320_P 323_A 1.049 0.94
422_T 432_R 1.048 0.94
423_E 427_Q 1.048 0.94
55_C 80_V 1.048 0.94
243_G 285_L 1.047 0.94
181_A 185_S 1.043 0.94
11_V 67_T 1.042 0.94
176_E 195_T 1.041 0.94
13_D 106_K 1.037 0.94
30_Y 118_E 1.029 0.94
143_G 148_M 1.026 0.94
421_K 439_L 1.025 0.93
28_W 118_E 1.023 0.93
405_V 409_V 1.023 0.93
141_M 177_L 1.019 0.93
154_E 371_L 1.016 0.93
143_G 321_L 1.015 0.93
372_L 381_E 1.004 0.93
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4l4uA10.98871000.093Contact Map0.731
1ny5A20.86851000.215Contact Map0.794
3dzdA20.83451000.255Contact Map0.78
1ojlA60.68931000.427Contact Map0.768
4fwgA10.92741000.641Contact Map0.368
1r6bX10.89571000.653Contact Map0.338
2bjvA10.59861000.659Contact Map0.678
1qvrA30.88661000.671Contact Map0.298
3pxiA30.86621000.7Contact Map0.372
1hqcA20.60541000.704Contact Map0.466

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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