May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YAGP - YAHO
UniProt: P75684 - P75694
Length: 227
Sequences: 144
Seq/Len: 0.69
I_Prob: 0.00

YAGP - Uncharacterized protein YagP
Paralog alert: 0.90 [within 20: 0.34] - ratio of genomes with paralogs
Cluster includes: YAGP
YAHO - Uncharacterized protein YahO
Paralog alert: 0.97 [within 20: 0.46] - ratio of genomes with paralogs
Cluster includes: BHSA MCBA YAHO YBIJ YHCN YJFN YJFY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
97_L 49_M 1.51 0.00
22_G 1_M 1.05 0.00
97_L 43_I 1.03 0.00
11_A 56_E 1.01 0.00
97_L 58_L 0.99 0.00
12_G 69_V 0.94 0.00
12_G 46_S 0.89 0.00
121_L 37_Y 0.87 0.00
107_F 69_V 0.82 0.00
77_T 19_V 0.82 0.00
130_E 48_E 0.81 0.00
109_L 43_I 0.80 0.00
93_L 72_L 0.80 0.00
128_V 19_V 0.80 0.00
94_V 19_V 0.79 0.00
11_A 80_K 0.77 0.00
93_L 27_K 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0253 seconds.