May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PTSN - YRBA
UniProt: P69829 - P0A9W6
Length: 247
Sequences: 146
Seq/Len: 0.63
I_Prob: 0.65

PTSN - Nitrogen regulatory protein
Paralog alert: 0.75 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: PTFA PTKA PTMA PTSN SGCA ULAC
YRBA - Uncharacterized protein YrbA
Paralog alert: 0.81 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: BOLA YRBA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
154_T 65_V 2.13 0.65
36_S 62_I 1.76 0.36
10_L 32_A 1.41 0.14
91_E 73_A 1.31 0.10
39_A 40_M 1.25 0.09
106_L 23_G 1.24 0.08
146_D 45_K 1.23 0.08
96_F 72_P 1.18 0.07
102_Q 34_G 1.18 0.07
81_L 39_G 1.17 0.06
118_K 30_V 1.16 0.06
81_L 28_F 1.16 0.06
10_L 50_Y 1.13 0.06
132_A 69_A 1.10 0.05
95_A 24_D 1.09 0.05
110_L 6_I 1.09 0.05
89_Q 49_V 1.08 0.04
60_M 60_N 1.08 0.04
109_A 6_I 1.08 0.04
89_Q 84_F 1.08 0.04
38_L 24_D 1.08 0.04
147_E 79_R 1.07 0.04
138_R 16_L 1.06 0.04
51_F 7_Q 1.06 0.04
47_P 55_E 1.06 0.04
59_K 38_D 1.03 0.04
106_L 74_E 1.02 0.04
137_C 3_N 1.02 0.04
127_V 13_A 1.01 0.03
127_V 28_F 1.01 0.03
145_S 69_A 1.01 0.03
136_I 20_H 1.00 0.03
13_V 49_V 1.00 0.03
92_T 31_I 0.99 0.03
59_K 76_A 0.99 0.03
62_S 20_H 0.98 0.03
138_R 28_F 0.98 0.03
90_L 79_R 0.97 0.03
17_E 22_S 0.97 0.03
131_L 27_H 0.97 0.03
134_K 14_L 0.97 0.03
88_V 3_N 0.96 0.03
99_I 70_Y 0.96 0.03
41_K 39_G 0.96 0.03
94_I 76_A 0.95 0.03
35_I 10_L 0.94 0.02
139_R 9_V 0.93 0.02
45_L 61_R 0.93 0.02
84_V 65_V 0.92 0.02
52_E 76_A 0.91 0.02
120_H 25_G 0.91 0.02
89_Q 28_F 0.91 0.02
52_E 19_V 0.90 0.02
125_S 49_V 0.90 0.02
153_I 65_V 0.90 0.02
50_V 11_M 0.90 0.02
119_T 77_R 0.89 0.02
148_E 58_A 0.89 0.02
142_A 73_A 0.88 0.02
105_D 60_N 0.88 0.02
137_C 40_M 0.88 0.02
53_A 60_N 0.88 0.02
148_E 34_G 0.88 0.02
42_Q 35_E 0.88 0.02
134_K 52_P 0.87 0.02
132_A 28_F 0.87 0.02
50_V 48_T 0.86 0.02
127_V 10_L 0.86 0.02
91_E 12_N 0.86 0.02
56_T 12_N 0.85 0.02
149_L 46_Q 0.85 0.02
156_T 12_N 0.85 0.02
87_F 30_V 0.85 0.02
17_E 29_Q 0.84 0.02
134_K 16_L 0.84 0.02
54_I 82_N 0.83 0.01
54_I 84_F 0.83 0.01
23_V 44_K 0.82 0.01
88_V 6_I 0.82 0.01
117_T 45_K 0.82 0.01
65_I 37_F 0.81 0.01
86_V 10_L 0.81 0.01
52_E 15_S 0.81 0.01
56_T 74_E 0.80 0.01
65_I 9_V 0.80 0.01
49_V 21_V 0.80 0.01
147_E 19_V 0.80 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0586 seconds.