| UniProt: | P0A9W6 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12796 | ||
| Length: | 84 (78) | ||
| Sequences: | 1511 | ||
| Seq/Len: | 19.37 |
| YRBA
Paralog alert: 0.81 [within 20: 0.00] - ratio of genomes with paralogs Cluster includes: BOLA YRBA |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 7_Q | 11_M | 3.241 | 1.00 | |
| 40_M | 48_T | 2.875 | 1.00 | |
| 40_M | 44_K | 2.482 | 1.00 | |
| 8_S | 12_N | 2.307 | 1.00 | |
| 35_E | 38_D | 2.219 | 1.00 | |
| 45_K | 74_E | 2.148 | 1.00 | |
| 9_V | 56_Y | 2.105 | 1.00 | |
| 38_D | 73_A | 1.916 | 1.00 | |
| 50_Y | 57_I | 1.898 | 1.00 | |
| 43_V | 47_Q | 1.836 | 1.00 | |
| 4_N | 7_Q | 1.809 | 1.00 | |
| 35_E | 72_P | 1.802 | 1.00 | |
| 57_I | 62_I | 1.748 | 1.00 | |
| 20_H | 31_I | 1.617 | 1.00 | |
| 16_L | 19_V | 1.573 | 1.00 | |
| 41_S | 44_K | 1.556 | 1.00 | |
| 31_I | 70_Y | 1.552 | 1.00 | |
| 54_M | 58_A | 1.548 | 1.00 | |
| 29_Q | 68_K | 1.538 | 1.00 | |
| 22_S | 29_Q | 1.48 | 1.00 | |
| 31_I | 68_K | 1.389 | 0.99 | |
| 14_L | 48_T | 1.383 | 0.99 | |
| 70_Y | 75_W | 1.367 | 0.99 | |
| 44_K | 47_Q | 1.351 | 0.99 | |
| 13_A | 52_P | 1.284 | 0.99 | |
| 14_L | 32_A | 1.274 | 0.99 | |
| 46_Q | 67_I | 1.206 | 0.98 | |
| 43_V | 50_Y | 1.194 | 0.98 | |
| 21_V | 30_V | 1.184 | 0.98 | |
| 3_N | 7_Q | 1.16 | 0.97 | |
| 47_Q | 50_Y | 1.158 | 0.97 | |
| 4_N | 8_S | 1.125 | 0.97 | |
| 73_A | 77_R | 1.103 | 0.96 | |
| 47_Q | 51_G | 1.087 | 0.96 | |
| 15_S | 36_L | 1.083 | 0.96 | |
| 45_K | 69_A | 1.08 | 0.95 | |
| 32_A | 69_A | 1.068 | 0.95 | |
| 56_Y | 61_R | 1.039 | 0.94 | |
| 5_E | 8_S | 1.032 | 0.94 | |
| 33_V | 71_T | 1.011 | 0.93 | |
| 24_D | 27_H | 1.001 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1ny8A | 1 | 1 | 100 | 0.039 | Contact Map | 0.569 |
| 3tr3A | 2 | 0.9167 | 99.9 | 0.101 | Contact Map | 0.759 |
| 2dhmA | 1 | 0.9881 | 99.9 | 0.109 | Contact Map | 0.563 |
| 2kdnA | 1 | 0.9643 | 99.9 | 0.114 | Contact Map | 0.621 |
| 1v9jA | 1 | 0.9405 | 99.9 | 0.118 | Contact Map | 0.645 |
| 3o2eA | 1 | 0.9405 | 99.9 | 0.119 | Contact Map | 0.741 |
| 1xs3A | 1 | 0.881 | 99.9 | 0.122 | Contact Map | 0.291 |
| 1v60A | 1 | 0.9881 | 99.9 | 0.124 | Contact Map | 0.667 |
| 2mcqA | 1 | 0.8571 | 99.9 | 0.158 | Contact Map | 0.563 |
| 2kz0A | 1 | 0.8095 | 99.9 | 0.206 | Contact Map | 0.479 |
Sequence Conservation (Image Generated using WebLogo v3)