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OPENSEQ.org

APT - PYRF
UniProt: P69503 - P08244
Length: 428
Sequences: 312
Seq/Len: 0.81
I_Prob: 0.00

APT - Adenine phosphoribosyltransferase
Paralog alert: 0.86 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: APT PYRE
PYRF - Orotidine 5'-phosphate decarboxylase
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PYRF SGBH ULAD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
75_A 157_L 1.35 0.00
48_L 68_I 1.34 0.00
124_V 168_C 1.28 0.00
163_G 142_G 1.24 0.00
139_V 170_A 1.12 0.00
63_T 167_V 1.12 0.00
106_T 140_D 1.09 0.00
118_P 182_Q 1.07 0.00
168_E 158_T 1.05 0.00
126_D 97_N 1.05 0.00
161_L 147_P 1.04 0.00
143_R 237_I 1.04 0.00
136_E 204_I 1.02 0.00
55_A 136_S 1.00 0.00
143_R 17_V 0.99 0.00
126_D 75_H 0.99 0.00
60_V 181_G 0.97 0.00
177_L 21_L 0.97 0.00
23_K 168_C 0.96 0.00
140_K 181_G 0.95 0.00
118_P 232_Q 0.95 0.00
147_G 216_D 0.95 0.00
126_D 95_M 0.94 0.00
83_V 97_N 0.94 0.00
117_K 228_V 0.92 0.00
119_G 149_D 0.92 0.00
76_L 216_D 0.90 0.00
37_D 98_V 0.90 0.00
148_E 237_I 0.89 0.00
83_V 216_D 0.89 0.00
124_V 97_N 0.89 0.00
124_V 29_A 0.88 0.00
147_G 107_M 0.88 0.00
61_V 17_V 0.88 0.00
125_V 182_Q 0.87 0.00
126_D 125_I 0.87 0.00
172_I 215_V 0.86 0.00
162_G 98_V 0.86 0.00
126_D 163_L 0.86 0.00
21_Y 194_Q 0.86 0.00
144_R 124_L 0.85 0.00
75_A 236_A 0.85 0.00
162_G 125_I 0.85 0.00
63_T 163_L 0.84 0.00
61_V 167_V 0.84 0.00
163_G 173_A 0.84 0.00
76_L 134_E 0.83 0.00
61_V 241_L 0.83 0.00
48_L 50_F 0.82 0.00
174_S 45_V 0.82 0.00
120_D 147_P 0.81 0.00
47_L 176_F 0.80 0.00
140_K 63_Q 0.80 0.00
103_E 96_V 0.79 0.00
126_D 186_L 0.78 0.00
161_L 159_Q 0.78 0.00
36_E 175_R 0.78 0.00
50_E 139_V 0.78 0.00
171_G 177_K 0.77 0.00
138_T 101_S 0.77 0.00
57_I 151_A 0.77 0.00
78_L 67_D 0.77 0.00
41_Y 47_K 0.77 0.00
58_T 16_P 0.77 0.00
68_F 224_V 0.77 0.00
44_S 191_I 0.77 0.00
161_L 175_R 0.77 0.00
175_Y 220_I 0.77 0.00
39_K 183_E 0.76 0.00
157_N 168_C 0.76 0.00
126_D 167_V 0.75 0.00
168_E 25_N 0.75 0.00
167_L 65_G 0.74 0.00
139_V 196_S 0.74 0.00
53_K 68_I 0.74 0.00
45_I 122_P 0.74 0.00
60_V 180_F 0.74 0.00
103_E 125_I 0.74 0.00
68_F 184_F 0.74 0.00
144_R 179_V 0.74 0.00
181_P 229_D 0.74 0.00
39_K 197_E 0.73 0.00
89_G 217_Y 0.73 0.00
171_G 35_K 0.73 0.00
176_S 17_V 0.73 0.00
69_L 103_G 0.73 0.00
69_L 101_S 0.73 0.00
178_V 193_P 0.72 0.00
75_A 208_E 0.72 0.00
106_T 157_L 0.72 0.00
51_R 137_D 0.72 0.00
42_A 232_Q 0.72 0.00
150_A 55_P 0.72 0.00
117_K 216_D 0.71 0.00
74_V 83_H 0.71 0.00
164_E 64_R 0.71 0.00
164_E 159_Q 0.71 0.00
120_D 101_S 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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