May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PUUB - PUUR
UniProt: P37906 - P0A9U6
Length: 611
Sequences: 455
Seq/Len: 0.76
I_Prob: 0.00

PUUB - Gamma-glutamylputrescine oxidoreductase
Paralog alert: 0.68 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: DADA LHGO MTOX PUUB
PUUR - HTH-type transcriptional regulator PuuR
Paralog alert: 0.63 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: PUUR YDCN
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
172_A 47_P 1.22 0.00
32_V 20_G 1.17 0.00
343_T 21_L 1.12 0.00
379_A 139_I 1.01 0.00
193_A 37_I 0.99 0.00
32_V 60_G 0.99 0.00
33_V 91_Q 0.99 0.00
47_A 110_I 0.98 0.00
33_V 75_E 0.97 0.00
172_A 171_A 0.93 0.00
50_G 20_G 0.93 0.00
158_N 21_L 0.92 0.00
298_Y 40_I 0.91 0.00
173_L 17_Q 0.91 0.00
153_E 21_L 0.90 0.00
192_D 175_R 0.89 0.00
73_L 12_L 0.89 0.00
33_V 80_I 0.89 0.00
156_D 116_P 0.89 0.00
343_T 139_I 0.88 0.00
247_A 35_S 0.88 0.00
131_D 73_P 0.88 0.00
376_R 135_L 0.87 0.00
382_L 61_L 0.87 0.00
227_A 8_P 0.87 0.00
218_V 154_Q 0.85 0.00
46_L 27_A 0.84 0.00
57_E 173_I 0.84 0.00
54_V 145_G 0.84 0.00
189_G 149_H 0.83 0.00
114_Y 37_I 0.83 0.00
218_V 63_L 0.83 0.00
231_I 22_S 0.83 0.00
132_K 138_E 0.83 0.00
225_V 21_L 0.82 0.00
49_A 15_I 0.82 0.00
394_N 66_F 0.82 0.00
142_E 59_Y 0.82 0.00
172_A 123_R 0.82 0.00
73_L 10_K 0.82 0.00
111_I 12_L 0.81 0.00
100_M 39_T 0.81 0.00
145_E 63_L 0.81 0.00
158_N 83_D 0.81 0.00
64_G 80_I 0.81 0.00
32_V 140_V 0.81 0.00
346_R 8_P 0.81 0.00
320_L 8_P 0.81 0.00
216_A 84_D 0.81 0.00
27_T 32_L 0.81 0.00
343_T 128_G 0.80 0.00
33_V 57_K 0.80 0.00
201_V 146_Q 0.80 0.00
58_A 30_S 0.80 0.00
27_T 30_S 0.80 0.00
58_A 117_G 0.80 0.00
209_Q 144_N 0.80 0.00
196_L 135_L 0.79 0.00
232_V 183_T 0.79 0.00
355_T 79_V 0.79 0.00
146_R 21_L 0.79 0.00
153_E 20_G 0.79 0.00
33_V 165_S 0.79 0.00
124_G 160_T 0.78 0.00
242_V 68_S 0.78 0.00
296_L 27_A 0.78 0.00
162_R 37_I 0.78 0.00
213_T 80_I 0.78 0.00
233_A 70_P 0.78 0.00
145_E 146_Q 0.78 0.00
357_I 79_V 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1126 seconds.