May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

LIVH - LIVJ
UniProt: P0AEX7 - P0AD96
Length: 675
Sequences: 3300
Seq/Len: 5.12
I_Prob: 0.00

LIVH - High-affinity branched-chain amino acid transport system permease protein LivH
Paralog alert: 0.93 [within 20: 0.67] - ratio of genomes with paralogs
Cluster includes: ALSC ARAH LIVH LSRC LSRD MGLC RBSC XYLH YJFF YPHD YTFT
LIVJ - Leu/Ile/Val-binding protein
Paralog alert: 0.68 [within 20: 0.28] - ratio of genomes with paralogs
Cluster includes: LIVJ LIVK
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
219_A 86_N 0.69 0.00
264_L 75_A 0.62 0.00
269_A 207_T 0.61 0.00
211_I 26_I 0.60 0.00
217_A 199_T 0.58 0.00
14_N 210_A 0.56 0.00
113_G 148_G 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0367 seconds.