May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

CORC - YAFV
UniProt: P0AE78 - Q47679
Length: 548
Sequences: 564
Seq/Len: 1.10
I_Prob: 0.01

CORC - Magnesium and cobalt efflux protein CorC
Paralog alert: 0.73 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: CORC YFJD YTFL
YAFV - UPF0012 hydrolase YafV
Paralog alert: 0.77 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: YAFV YBEM YOBB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
53_D 189_A 1.36 0.01
64_I 145_R 1.26 0.00
243_V 102_V 1.26 0.00
243_V 181_A 1.24 0.00
239_I 48_F 1.22 0.00
239_I 206_D 1.19 0.00
27_F 90_V 1.17 0.00
234_E 66_M 1.13 0.00
92_L 162_V 1.11 0.00
281_I 19_P 1.11 0.00
216_A 177_L 1.10 0.00
71_D 158_L 1.07 0.00
116_I 188_V 1.03 0.00
254_G 178_T 1.03 0.00
36_E 48_F 1.03 0.00
239_I 120_Y 1.01 0.00
69_V 13_L 1.01 0.00
122_L 178_T 1.00 0.00
35_D 210_I 1.00 0.00
71_D 64_N 0.99 0.00
175_V 145_R 0.97 0.00
267_A 159_A 0.96 0.00
97_E 148_V 0.96 0.00
116_I 28_Q 0.95 0.00
61_V 109_H 0.95 0.00
179_V 145_R 0.94 0.00
45_G 13_L 0.93 0.00
161_Q 156_Y 0.93 0.00
5_N 29_L 0.92 0.00
36_E 95_L 0.92 0.00
66_D 35_R 0.92 0.00
239_I 231_E 0.91 0.00
132_A 48_F 0.91 0.00
58_L 209_V 0.91 0.00
191_E 37_V 0.91 0.00
235_E 39_V 0.90 0.00
21_L 32_I 0.89 0.00
236_V 29_L 0.89 0.00
222_D 234_M 0.89 0.00
236_V 230_A 0.89 0.00
69_V 38_I 0.89 0.00
105_V 39_V 0.89 0.00
16_K 77_I 0.88 0.00
113_I 218_A 0.88 0.00
108_E 39_V 0.87 0.00
35_D 209_V 0.86 0.00
150_R 95_L 0.86 0.00
236_V 51_E 0.86 0.00
212_W 12_P 0.85 0.00
167_I 136_I 0.85 0.00
225_E 19_P 0.84 0.00
176_S 151_R 0.84 0.00
90_E 96_V 0.84 0.00
69_V 171_L 0.84 0.00
110_K 169_R 0.84 0.00
124_P 60_D 0.84 0.00
66_D 217_I 0.84 0.00
273_R 191_C 0.84 0.00
61_V 193_R 0.83 0.00
23_L 218_A 0.83 0.00
104_P 9_L 0.83 0.00
119_A 193_R 0.83 0.00
179_V 13_L 0.83 0.00
3_D 224_Q 0.83 0.00
44_S 163_A 0.82 0.00
64_I 109_H 0.82 0.00
202_I 189_A 0.82 0.00
48_D 48_F 0.82 0.00
87_T 37_V 0.81 0.00
57_M 38_I 0.81 0.00
134_S 152_N 0.81 0.00
224_N 105_Y 0.81 0.00
184_I 63_V 0.81 0.00
130_A 45_T 0.81 0.00
235_E 161_Y 0.80 0.00
169_I 154_N 0.80 0.00
123_L 182_I 0.80 0.00
191_E 159_A 0.80 0.00
128_S 211_N 0.80 0.00
113_I 120_Y 0.80 0.00
216_A 68_A 0.80 0.00
144_V 43_M 0.80 0.00
249_H 97_E 0.79 0.00
191_E 189_A 0.79 0.00
54_T 139_L 0.79 0.00
225_E 223_H 0.79 0.00
273_R 213_Q 0.79 0.00
208_S 135_R 0.78 0.00
101_S 110_L 0.78 0.00
23_L 24_H 0.78 0.00
57_M 25_F 0.77 0.00
209_R 135_R 0.77 0.00
11_T 100_G 0.77 0.00
199_E 92_R 0.77 0.00
128_S 38_I 0.77 0.00
43_D 179_A 0.77 0.00
250_L 216_I 0.77 0.00
206_Q 66_M 0.77 0.00
17_G 148_V 0.77 0.00
66_D 14_V 0.77 0.00
66_D 191_C 0.77 0.00
189_V 44_F 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0422 seconds.