May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
CSPA - GHRB
UniProt: P0A9X9 - P37666
Length: 394
Sequences: 245
Seq/Len: 0.64
I_Prob: 0.02
CSPA - Cold shock protein CspA
Paralog alert: 0.78 [within 20: 0.16] - ratio of genomes with paralogs
Cluster includes: CSPA CSPB CSPC CSPD CSPE CSPF CSPG CSPH CSPI 		GHRB - Glyoxylate/hydroxypyruvate reductase B
Paralog alert: 0.88 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: GHRA GHRB LDHD SERA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
44_S 218_F 1.70 0.02
43_K 201_S 1.35 0.01
54_T 78_D 1.30 0.01
50_K 168_F 1.22 0.01
27_S 58_A 1.14 0.01
18_F 118_V 1.13 0.00
37_I 259_G 1.13 0.00
43_K 227_K 1.00 0.00
60_K 128_G 1.00 0.00
34_F 254_E 0.99 0.00
44_S 167_G 0.99 0.00
25_D 102_T 0.98 0.00
8_I 112_L 0.97 0.00
18_F 25_V 0.93 0.00
18_F 168_F 0.91 0.00
14_A 233_I 0.90 0.00
58_G 241_V 0.90 0.00
28_K 107_L 0.89 0.00
50_K 253_G 0.89 0.00
60_K 148_L 0.87 0.00
60_K 210_L 0.87 0.00
24_D 171_P 0.86 0.00
34_F 227_K 0.84 0.00
30_V 58_A 0.84 0.00
69_S 220_A 0.84 0.00
55_I 282_A 0.83 0.00
54_T 171_P 0.83 0.00
66_N 112_L 0.81 0.00
34_F 242_D 0.81 0.00
48_G 278_A 0.81 0.00
55_I 70_T 0.79 0.00
11_W 197_L 0.79 0.00
14_A 253_G 0.78 0.00
36_A 201_S 0.77 0.00
54_T 281_V 0.77 0.00
15_D 206_L 0.77 0.00
62_P 307_D 0.76 0.00
8_I 121_V 0.76 0.00
67_V 75_V 0.75 0.00
25_D 107_L 0.74 0.00
38_Q 204_V 0.74 0.00
70_L 221_E 0.74 0.00
67_V 280_V 0.73 0.00
46_D 233_I 0.73 0.00
35_S 148_L 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1536 seconds.