OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [L:0044] and [L:0095]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.3	0.2	0.2	0.7	0	0.1	0	-0.1	0	-0.2	-0.1	-0.3	-0.2	0.1	-0.3	-0.4	-0.1	0.6	-0.1	-0.1
F	-0.3	0.6	0.2	0.6	0.2	0.2	0	0.5	-0.2	0.1	-0.1	-0.2	-0.1	0	-0.1	-0.2	0.1	0.1	-0.1	-0.5
I	0.6	0.3	0.1	-0.1	0.3	-0.1	-0.6	0.6	-0.3	-0.2	-0.3	0.1	-0.3	-0.3	-0.1	0	-0.2	1	0.3	0.1
L	0.2	0.4	0	-0.1	0.1	-0.3	1	0.5	-0.4	-0.1	-0.1	0	0.2	-0.2	0.1	-0.1	0.6	-0.3	-0.3	0.6
V	0.5	0.4	0.4	0	0.5	0.1	0.2	0.5	-0.1	-0.3	0.2	-0.7	0.1	-0.4	0.1	0.2	-0.2	-0.7	-0.2	0.2
M	0.2	-0.2	0.8	0.4	0.4	0.3	-0.1	-0.3	-0.1	0	0	0.1	-0.1	-0.1	-0.1	-0.3	-0.2	-0.2	-0.1	-0.1
W	0.1	0.1	-0.2	0.1	-0.3	0.3	0	-0.2	0	0	0	0	0	0	0	0.2	-0.1	0	0	-0.1
Y	-0.5	1	0.2	0.2	0.1	0.1	-0.3	0.6	-0.1	-0.1	-0.1	-0.2	-0.1	-0.1	-0.1	-0.1	-0.3	-0.3	-0.1	-0.2
D	-0.2	-0.1	0	-0.2	-0.2	0	0	0.2	0	0	0	0	0	0	0	0	0	0	0	0
E	0.1	0.1	-0.3	0.1	-0.3	-0.1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
K	-0.1	-0.1	0	-0.2	0.1	0	0	-0.1	0	0	0	0	0	0	0	0	0	0	0	0
R	0.4	-0.1	-0.4	-0.1	0.1	0.1	0	-0.1	0	0	0	0	0	0	0	0	0	0	0	-0.1
H	-0.1	-0.2	-0.3	0.3	0.1	-0.1	0	-0.1	0	0	0	0.2	0	0.2	0	0	0	0	0	-0.1
N	-0.3	-0.2	-0.4	0.1	0.5	-0.1	0	-0.1	0	0	0	0	0	0	0	0	0	0	0	0
Q	0	-0.2	-0.1	-0.4	0.4	-0.1	0	-0.1	0	0	0	0.2	0	0	0	0	0	0	0	-0.1
S	0.1	-0.7	0.1	0.2	-0.2	0.2	-0.1	-0.6	-0.1	0	0	0.2	0	0	0	-0.1	0	-0.1	0	0
T	0.2	-0.2	0.1	0.3	0.2	0.2	-0.1	-0.2	-0.1	0	0	0.2	0	0	0	0.3	-0.2	0.1	0	-0.3
G	0.3	0.4	-0.1	-0.3	0.1	-0.1	-0.1	-0.2	0.2	0	0	-0.1	0	-0.1	0	0.5	-0.2	-0.1	0	0.1
P	-0.3	0.2	0	0.3	-0.3	-0.1	0	-0.1	0	0	0	0	0	0.2	0	0	0	0	0	-0.1
C	-0.8	-0.5	0.8	-0.2	0	-0.2	0.1	-0.5	0.1	-0.1	-0.1	0.1	-0.1	-0.1	-0.1	0.1	0.5	0	-0.1	0.5

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0044	-0.3	0.4	1.6	2	1.5	0.4	-0.2	0.1	-1	-0.7	-0.9	-0.1	-0.3	-0.6	-0.6	0.3	0.3	0	-0.2	-0.7
0095	0.2	1.4	2	2.5	1.8	0.7	-0.2	0.6	-1.1	-1.4	-1.1	-0.6	-1.2	-1.1	-1	-0.1	-0.2	-0.3	-1	-0.1

Select residue pair below:

i_j	Score	Prob
0095_0105	1.054	0.95
0095_0140	1.026	0.94
0044_0095	0.729	0.65
0089_0095	0.670	0.56
0095_0133	0.642	0.51

Local Interactions:

i_j	Score	Prob
0095_0096	0.954	0.90
0094_0095	0.888	0.85

See all coupling residues
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