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OPENSEQ.org
FBPB - FBPC
UniProt: P75681 - P37009
Length: 463
Sequences: 6454
Seq/Len: 14.47
I_Prob: 1.00
FBPB - Putative ferric transport system permease protein FbpB (Fragment)
Paralog alert: 0.91 [within 20: 0.68] - ratio of genomes with paralogs
Cluster includes: FBPB 		FBPC - Fe(3+) ions import ATP-binding protein FbpC
Paralog alert: 0.82 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfAB:G:FContact Map
3d31AB:CDContact Map
2onkABGF:CHDIContact Map
3tuiCHDG:AEBFContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
9_E 50_R 2.92 1.00
24_H 101_Y 2.65 1.00
24_H 104_K 2.11 0.99
11_S 101_Y 2.05 0.99
14_L 90_F 1.80 0.98
12_L 76_Q 1.74 0.97
13_S 55_L 1.58 0.95
6_S 86_S 1.57 0.95
14_L 102_G 1.29 0.85
16_A 101_Y 1.07 0.68
13_S 82_M 1.06 0.67
24_H 105_M 1.01 0.62
20_R 105_M 1.01 0.61
29_L 92_H 0.96 0.56
24_H 93_M 0.92 0.51
13_S 80_I 0.87 0.45
13_S 81_C 0.84 0.40
4_D 86_S 0.81 0.37
10_A 84_F 0.79 0.34
16_A 105_M 0.77 0.32
6_S 142_Q 0.75 0.30
17_G 77_Q 0.75 0.29
14_L 153_L 0.72 0.26
18_S 76_Q 0.72 0.26
15_R 105_M 0.68 0.21
9_E 56_E 0.61 0.16
10_A 88_A 0.59 0.14
17_G 76_Q 0.57 0.12
9_E 55_L 0.56 0.12
7_L 91_P 0.54 0.11
15_R 106_L 0.54 0.10
29_L 91_P 0.51 0.09
25_I 280_I 0.50 0.08
49_V 46_T 0.46 0.06
13_S 153_L 0.46 0.06
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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