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OPENSEQ.org

CBRA - YDIQ
UniProt: P31456 - P76201
Length: 608
Sequences: 392
Seq/Len: 0.68
I_Prob: 0.00

CBRA - Protein CbrA
Paralog alert: 0.83 [within 20: 0.32] - ratio of genomes with paralogs
Cluster includes: CBRA FIXC UBIF UBIH VISC YDIS YGCN
YDIQ - Putative electron transfer flavoprotein subunit YdiQ
Paralog alert: 0.38 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: FIXA YDIQ YGCR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
4_F 187_S 1.39 0.00
14_A 56_A 1.35 0.00
8_I 228_E 1.31 0.00
17_A 102_A 1.27 0.00
152_V 103_A 1.27 0.00
316_R 43_A 1.25 0.00
152_V 61_G 1.21 0.00
146_I 98_A 1.19 0.00
161_V 1_M 1.17 0.00
152_V 109_G 1.15 0.00
8_I 151_N 1.14 0.00
256_S 37_D 1.11 0.00
216_G 124_A 1.10 0.00
140_D 166_I 1.09 0.00
109_S 206_D 1.05 0.00
263_C 37_D 1.04 0.00
161_V 172_A 1.02 0.00
311_Y 32_K 1.02 0.00
9_I 237_D 1.01 0.00
274_A 40_A 1.01 0.00
269_F 119_S 1.01 0.00
125_K 45_S 1.00 0.00
168_D 55_A 1.00 0.00
216_G 122_L 0.99 0.00
173_K 37_D 0.98 0.00
20_R 69_V 0.98 0.00
70_I 64_L 0.98 0.00
270_L 84_V 0.97 0.00
216_G 37_D 0.97 0.00
98_I 103_A 0.96 0.00
247_S 94_P 0.96 0.00
155_D 80_S 0.95 0.00
9_I 40_A 0.95 0.00
216_G 56_A 0.94 0.00
298_S 44_A 0.94 0.00
290_L 187_S 0.94 0.00
225_T 113_L 0.94 0.00
98_I 174_L 0.93 0.00
313_R 174_L 0.93 0.00
242_G 84_V 0.92 0.00
180_W 86_D 0.92 0.00
154_A 145_A 0.92 0.00
149_R 55_A 0.92 0.00
310_A 45_S 0.91 0.00
301_L 166_I 0.91 0.00
138_R 128_G 0.91 0.00
277_F 204_A 0.91 0.00
106_W 51_D 0.91 0.00
123_C 126_Q 0.91 0.00
23_A 37_D 0.90 0.00
105_L 73_V 0.90 0.00
187_V 33_I 0.90 0.00
117_V 151_N 0.90 0.00
133_W 188_M 0.90 0.00
180_W 61_G 0.89 0.00
295_I 226_Q 0.89 0.00
295_I 235_D 0.89 0.00
297_R 58_T 0.88 0.00
22_L 43_A 0.88 0.00
210_G 105_I 0.88 0.00
126_I 18_V 0.87 0.00
7_A 226_Q 0.87 0.00
76_F 181_N 0.87 0.00
144_Q 164_E 0.87 0.00
30_A 159_L 0.87 0.00
290_L 173_V 0.87 0.00
297_R 103_A 0.87 0.00
35_H 146_I 0.86 0.00
297_R 249_L 0.86 0.00
300_L 196_K 0.86 0.00
29_I 221_I 0.86 0.00
204_W 126_Q 0.86 0.00
213_I 33_I 0.85 0.00
95_Y 204_A 0.85 0.00
260_D 166_I 0.85 0.00
164_H 232_I 0.85 0.00
214_F 109_G 0.85 0.00
269_F 74_L 0.84 0.00
283_L 134_I 0.84 0.00
203_S 92_A 0.84 0.00
269_F 223_V 0.84 0.00
81_V 113_L 0.84 0.00
157_A 140_I 0.84 0.00
214_F 228_E 0.84 0.00
204_W 6_C 0.83 0.00
104_D 217_E 0.83 0.00
31_L 37_D 0.83 0.00
83_V 13_E 0.83 0.00
4_F 56_A 0.83 0.00
83_V 146_I 0.83 0.00
27_Q 149_Q 0.82 0.00
203_S 220_G 0.82 0.00
245_V 213_A 0.82 0.00
204_W 93_L 0.82 0.00
135_V 165_V 0.82 0.00
276_G 172_A 0.82 0.00
162_R 53_E 0.82 0.00
162_R 139_V 0.82 0.00
6_V 244_E 0.82 0.00
237_F 20_P 0.82 0.00
248_E 220_G 0.81 0.00
298_S 54_I 0.81 0.00
57_S 240_E 0.81 0.00
277_F 124_A 0.81 0.00
313_R 55_A 0.80 0.00
293_T 193_G 0.80 0.00
300_L 167_E 0.80 0.00
256_S 69_V 0.80 0.00
308_N 25_N 0.80 0.00
116_E 246_A 0.80 0.00
274_A 63_L 0.80 0.00
286_I 83_L 0.80 0.00
146_I 183_P 0.80 0.00
311_Y 103_A 0.80 0.00
189_F 55_A 0.80 0.00
242_G 103_A 0.79 0.00
203_S 112_L 0.79 0.00
303_Q 88_Q 0.79 0.00
214_F 70_R 0.79 0.00
125_K 4_I 0.79 0.00
108_K 63_L 0.79 0.00
159_S 139_V 0.78 0.00
115_V 1_M 0.78 0.00
31_L 125_Q 0.78 0.00
96_I 232_I 0.78 0.00
88_T 154_V 0.78 0.00
261_F 188_M 0.78 0.00
186_P 91_H 0.78 0.00
219_P 58_T 0.78 0.00
130_D 50_D 0.78 0.00
303_Q 221_I 0.78 0.00
148_A 27_D 0.78 0.00
210_G 92_A 0.78 0.00
255_P 206_D 0.78 0.00
299_V 164_E 0.77 0.00
238_Q 32_K 0.77 0.00
324_G 197_K 0.77 0.00
298_S 3_I 0.77 0.00
302_K 242_I 0.77 0.00
121_S 21_E 0.77 0.00
3_H 128_G 0.77 0.00
175_V 127_V 0.77 0.00
110_L 4_I 0.77 0.00
182_A 137_L 0.77 0.00
28_V 105_I 0.76 0.00
69_V 212_S 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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