| UniProt: | P60566 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11562 | ||
| Length: | 256 (251) | ||
| Sequences: | 1714 | ||
| Seq/Len: | 6.83 |
| FIXA
Paralog alert: 0.38 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: FIXA YDIQ YGCR |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 73_R | 84_L | 4.094 | 1.00 | |
| 156_T | 171_S | 3.813 | 1.00 | |
| 131_G | 179_A | 3.583 | 1.00 | |
| 56_Q | 83_E | 3.517 | 1.00 | |
| 106_A | 109_Q | 3.017 | 1.00 | |
| 44_A | 47_Q | 2.719 | 1.00 | |
| 143_V | 172_I | 2.604 | 1.00 | |
| 207_S | 210_D | 2.584 | 1.00 | |
| 110_K | 206_W | 2.513 | 1.00 | |
| 59_A | 76_V | 2.506 | 1.00 | |
| 148_K | 160_E | 2.488 | 1.00 | |
| 240_D | 243_E | 2.472 | 1.00 | |
| 148_K | 151_S | 2.465 | 1.00 | |
| 49_K | 82_D | 2.444 | 1.00 | |
| 87_V | 103_A | 2.424 | 1.00 | |
| 83_E | 204_Q | 2.318 | 1.00 | |
| 77_L | 84_L | 2.191 | 1.00 | |
| 44_A | 185_N | 2.169 | 1.00 | |
| 157_L | 172_I | 2.095 | 1.00 | |
| 105_A | 109_Q | 2.091 | 1.00 | |
| 34_I | 72_G | 2.048 | 1.00 | |
| 146_V | 178_V | 2.025 | 1.00 | |
| 116_I | 140_I | 1.972 | 1.00 | |
| 108_A | 116_I | 1.961 | 1.00 | |
| 2_K | 56_Q | 1.951 | 1.00 | |
| 101_A | 137_I | 1.912 | 1.00 | |
| 118_C | 134_V | 1.847 | 1.00 | |
| 121_G | 126_Y | 1.839 | 1.00 | |
| 158_T | 171_S | 1.822 | 1.00 | |
| 88_I | 205_V | 1.813 | 1.00 | |
| 104_L | 134_V | 1.79 | 1.00 | |
| 156_T | 173_P | 1.78 | 1.00 | |
| 3_I | 54_E | 1.78 | 1.00 | |
| 152_L | 157_L | 1.75 | 1.00 | |
| 61_S | 67_L | 1.742 | 1.00 | |
| 172_I | 176_A | 1.73 | 1.00 | |
| 180_V | 184_I | 1.724 | 1.00 | |
| 149_I | 157_L | 1.671 | 1.00 | |
| 64_G | 67_L | 1.646 | 1.00 | |
| 58_T | 83_E | 1.636 | 1.00 | |
| 42_I | 81_P | 1.623 | 1.00 | |
| 146_V | 159_V | 1.62 | 1.00 | |
| 151_S | 158_T | 1.602 | 1.00 | |
| 59_A | 81_P | 1.592 | 1.00 | |
| 191_S | 194_A | 1.575 | 1.00 | |
| 4_I | 108_A | 1.572 | 1.00 | |
| 250_E | 254_K | 1.557 | 0.99 | |
| 6_C | 118_C | 1.557 | 0.99 | |
| 114_D | 155_D | 1.552 | 0.99 | |
| 50_Q | 188_Q | 1.55 | 0.99 | |
| 115_L | 176_A | 1.538 | 0.99 | |
| 68_T | 74_K | 1.533 | 0.99 | |
| 206_W | 211_I | 1.532 | 0.99 | |
| 43_E | 188_Q | 1.531 | 0.99 | |
| 110_K | 204_Q | 1.525 | 0.99 | |
| 95_A | 103_A | 1.512 | 0.99 | |
| 51_Q | 151_S | 1.507 | 0.99 | |
| 239_G | 243_E | 1.496 | 0.99 | |
| 35_S | 38_D | 1.476 | 0.99 | |
| 110_K | 211_I | 1.464 | 0.99 | |
| 158_T | 169_T | 1.442 | 0.99 | |
| 58_T | 85_I | 1.44 | 0.99 | |
| 68_T | 205_V | 1.428 | 0.99 | |
| 161_R | 168_E | 1.405 | 0.99 | |
| 65_K | 88_I | 1.404 | 0.99 | |
| 39_L | 79_R | 1.398 | 0.99 | |
| 57_V | 81_P | 1.383 | 0.99 | |
| 208_A | 215_A | 1.382 | 0.99 | |
| 67_L | 86_V | 1.378 | 0.98 | |
| 157_L | 174_L | 1.369 | 0.98 | |
| 61_S | 86_V | 1.342 | 0.98 | |
| 60_L | 107_A | 1.325 | 0.98 | |
| 19_N | 22_D | 1.31 | 0.98 | |
| 241_G | 245_I | 1.294 | 0.97 | |
| 141_P | 176_A | 1.272 | 0.97 | |
| 26_D | 29_K | 1.267 | 0.97 | |
| 2_K | 58_T | 1.26 | 0.97 | |
| 160_E | 169_T | 1.259 | 0.97 | |
| 44_A | 148_K | 1.247 | 0.97 | |
| 40_N | 185_N | 1.228 | 0.96 | |
| 153_T | 158_T | 1.214 | 0.96 | |
| 153_T | 156_T | 1.214 | 0.96 | |
| 143_V | 170_L | 1.194 | 0.95 | |
| 105_A | 138_L | 1.176 | 0.95 | |
| 195_I | 201_K | 1.163 | 0.94 | |
| 155_D | 173_P | 1.158 | 0.94 | |
| 37_Y | 120_D | 1.148 | 0.94 | |
| 54_E | 57_V | 1.135 | 0.93 | |
| 87_V | 107_A | 1.133 | 0.93 | |
| 4_I | 113_F | 1.123 | 0.93 | |
| 89_D | 94_Q | 1.121 | 0.93 | |
| 140_I | 177_V | 1.117 | 0.93 | |
| 108_A | 113_F | 1.116 | 0.93 | |
| 34_I | 76_V | 1.109 | 0.92 | |
| 193_K | 197_G | 1.094 | 0.92 | |
| 58_T | 111_A | 1.091 | 0.92 | |
| 46_C | 194_A | 1.087 | 0.91 | |
| 160_E | 167_T | 1.087 | 0.91 | |
| 103_A | 107_A | 1.087 | 0.91 | |
| 135_G | 142_A | 1.078 | 0.91 | |
| 107_A | 206_W | 1.076 | 0.91 | |
| 46_C | 79_R | 1.076 | 0.91 | |
| 96_L | 218_A | 1.071 | 0.91 | |
| 85_I | 206_W | 1.07 | 0.91 | |
| 106_A | 110_K | 1.067 | 0.90 | |
| 105_A | 134_V | 1.063 | 0.90 | |
| 108_A | 134_V | 1.058 | 0.90 | |
| 77_L | 201_K | 1.057 | 0.90 | |
| 59_A | 73_R | 1.028 | 0.88 | |
| 157_L | 178_V | 1.028 | 0.88 | |
| 7_Y | 76_V | 1.024 | 0.88 | |
| 68_T | 203_V | 1.023 | 0.88 | |
| 88_I | 207_S | 1.021 | 0.88 | |
| 189_I | 195_I | 1.018 | 0.87 | |
| 147_S | 160_E | 1.018 | 0.87 | |
| 106_A | 211_I | 1.003 | 0.86 | |
| 117_L | 180_V | 1.003 | 0.86 | |
| 230_R | 233_Q | 1.002 | 0.86 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1o97C | 1 | 0.9766 | 100 | 0.196 | Contact Map | 0.789 |
| 1efpB | 2 | 0.9648 | 100 | 0.219 | Contact Map | 0.773 |
| 1efvB | 1 | 0.9648 | 100 | 0.241 | Contact Map | 0.831 |
| 3ih5A | 4 | 0.7734 | 100 | 0.627 | Contact Map | 0.65 |
| 1o97D | 1 | 0.8281 | 100 | 0.64 | Contact Map | 0.532 |
| 1efvA | 1 | 0.8203 | 99.9 | 0.673 | Contact Map | 0.689 |
| 1efpA | 2 | 0.8008 | 99.9 | 0.678 | Contact Map | 0.61 |
| 3fetA | 4 | 0.6406 | 99.9 | 0.696 | Contact Map | 0.652 |
| 3dloA | 4 | 0.4492 | 88.3 | 0.935 | Contact Map | 0.728 |
| 3idfA | 2 | 0.4375 | 88 | 0.935 | Contact Map | 0.563 |
Sequence Conservation (Image Generated using WebLogo v3)